WormBase Tree Display for Gene: WBGene00002133

WBGene00002133 SMap: S_parent: Sequence: W04D2
  Identity: Version: 1
    Name: CGC_name: inx-11 Person_evidence: WBPerson247
      Sequence_name: W04D2.3
      Molecular_name: W04D2.3a
        W04D2.3a.1
        CE06538
        W04D2.3b
        CE53090
        W04D2.3b.1
      Other_name: opu-11
        CELE_W04D2.3 Accession_evidence: NDB BX284605
      Public_name: inx-11
    DB_info: Database: AceView gene 5M971
        WormQTL gene WBGene00002133
        WormFlux gene WBGene00002133
        NDB locus_tag CELE_W04D2.3
        Panther gene CAEEL|WormBase=WBGene00002133|UniProtKB=Q23157
          family PTHR11893
        NCBI gene 179710
        RefSeq protein NM_001373129.3
            NM_001269497.3
        SwissProt UniProtAcc Q23157
        TrEMBL UniProtAcc C9IY29
        UniProt_GCRP UniProtAcc Q23157
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: inx
    Allele (91)
    Legacy_information: [Barnes TM] opu for OPUS protein. Predicted gene W04D2.
    Strain: WBStrain00032791
    RNASeq_FPKM (74)
    GO_annotation (21)
    Ortholog (43)
    Paralog (24)
    Structured_description: Concise_description: inx-11 encodes a predicted member of the innexin family; expressed in the pharynx, a few head neurons, the tail hypodermis, posterior intestine and in some vulval and uterine muscles. Paper_evidence: WBPaper00005286
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable gap junction hemi-channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Located in gap junction. Expressed in several structures, including egg-laying apparatus; epithelial cell; pharynx; spermatocyte; and tail neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W04D2.3a
      W04D2.3b
    Corresponding_CDS_history: W04D2.3b:wp270
    Corresponding_transcript: W04D2.3a.1
      W04D2.3b.1
    Other_sequence: HGC00298_1
      Acan_isotig04290
      HG11362
      BUC01661_1
      CJC05782_1
      Dviv_isotig24206
      Oden_isotig22470
    Associated_feature: WBsf647379
      WBsf661031
      WBsf661905
      WBsf1001597
      WBsf1001598
      WBsf1020585
      WBsf232659
      WBsf232660
  Experimental_info: RNAi_result: WBRNAi00026485 Inferred_automatically: RNAi_primary
      WBRNAi00019590 Inferred_automatically: RNAi_primary
      WBRNAi00054768 Inferred_automatically: RNAi_primary
      WBRNAi00036272 Inferred_automatically: RNAi_primary
      WBRNAi00107716 Inferred_automatically: RNAi_primary
      WBRNAi00107717 Inferred_automatically: RNAi_primary
      WBRNAi00009251 Inferred_automatically: RNAi_primary
      WBRNAi00071581 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1954
      Expr8679
      Expr11345
      Expr11356
      Expr1025411
      Expr1031249
      Expr1158304
      Expr2012785
      Expr2031024
    Drives_construct: WBCnstr00010545
      WBCnstr00013446
      WBCnstr00016947
      WBCnstr00018788
      WBCnstr00036427
    Construct_product: WBCnstr00018799
      WBCnstr00036427
    Microarray_results (23)
    Expression_cluster: WBPaper00033070:Elbe_downregulated
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045521:Oogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00048690:hermaphrodite-Z1-Z4_enriched
      WBPaper00048690:male-Z1-Z4_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059440:GLP-1_activated
      WBPaper00059471:EGL-43_interacting
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:CEPsh
      WBPaper00061340:g1A
      WBPaper00061340:hmc_and_homolog
      WBPaper00061340:pm3_pm4_pm5
      WBPaper00061340:pm8
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:pkn-1_20439-tbc-12_11015
      WBPaper00061651:LUA_enriched
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064952:Day10_vs_L4_upregulated_25C
      WBPaper00065841:37_0
      WBPaper00065841:108_0
      cgc4386_cluster_5_4
      cgc4489_group_9
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032948:StarveUp2
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00036286:Pattern_B
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00044535:male_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_3
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:mixed_oogenesis-somatic
  Map_info: Map: V Position: 4.38011 Error: 0.012504
    Positive: Positive_clone: W04D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00002950
    WBPaper00005286
    WBPaper00028502
    WBPaper00034603
    WBPaper00043411
    WBPaper00044311
    WBPaper00061401
    WBPaper00065757
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene