WormBase Tree Display for Gene: WBGene00002079
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| WBGene00002079 | Evidence | Person_evidence | WBPerson1780 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson2740 | |||||||||
| SMap | S_parent | Sequence | Y48G1A | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | xpo-2 | |||||||
| Sequence_name | Y48G1A.5 | ||||||||
| Molecular_name | Y48G1A.5a | ||||||||
| Y48G1A.5a.1 | |||||||||
| CE27001 | |||||||||
| Y48G1A.5b | |||||||||
| CE49337 | |||||||||
| Y48G1A.5b.1 | |||||||||
| Other_name | imb-5 | Person_evidence | WBPerson1160 | ||||||
| Y48G1A.c | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y48G1A.d | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y48G1A.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | xpo-2 | ||||||||
| DB_info | Database | AceView | gene | 1A792 | |||||
| WormQTL | gene | WBGene00002079 | |||||||
| WormFlux | gene | WBGene00002079 | |||||||
| NDB | locus_tag | CELE_Y48G1A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002079|UniProtKB=Q965V4 | |||||||
| family | PTHR10997 | ||||||||
| NCBI | gene | 171621 | |||||||
| RefSeq | protein | NM_058315.7 | |||||||
| NM_001306332.3 | |||||||||
| TrEMBL | UniProtAcc | Q965V4 | |||||||
| V6CKP0 | |||||||||
| UniProt_GCRP | UniProtAcc | Q965V4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 30 Jan 2008 11:44:52 | WBPerson2970 | Name_change | CGC_name | xpo-2 | ||||
| Other_name | imb-5 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | xpo | ||||||||
| Allele (70) | |||||||||
| Strain | WBStrain00022426 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00090697 | ||||||||
| 00090698 | |||||||||
| 00090699 | |||||||||
| 00090700 | |||||||||
| 00090701 | |||||||||
| 00109988 | |||||||||
| 00109989 | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | imb-5 encodes an importin-beta-like protein orthologous to mammalian CAS proteins (cellular apoptosis susceptibility) and Saccharomyces cerevisiae CSE1 (chromosome segregation 1); IMB-5 is predicted to function in nuclear transport of proteins required for mitotic progression or apoptosis as well as in re-export of importin-alpha, a nuclear import protein; in C. elegans, IMB-5 is essential for embryogenesis and required for normal pronuclear envelope dynamics, and may also play a role in vulval morphogenesis. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus and protein import into nucleus. Predicted to be located in cytosol and nuclear envelope. Is an ortholog of human CSE1L (chromosome segregation 1 like). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G1A.5a | |||||||
| Y48G1A.5b | |||||||||
| Corresponding_transcript | Y48G1A.5a.1 | ||||||||
| Y48G1A.5b.1 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf648902 | ||||||||
| WBsf218890 | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr1025249 | ||||||||
| Expr1031232 | |||||||||
| Expr1160383 | |||||||||
| Expr2018107 | |||||||||
| Expr2036245 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (175) | |||||||||
| Interaction (58) | |||||||||
| Map_info | Map | I | Position | -19.078 | Error | 0.004158 | |||
| Positive | Positive_clone | Y48G1A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4872 | |||||||
| 4732 | |||||||||
| 5341 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026593 | ||||||||
| WBPaper00031613 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049531 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
