WormBase Tree Display for Gene: WBGene00002056
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WBGene00002056 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name | CGC_name | ifc-2 | Person_evidence | WBPerson105 | |||||
WBPerson293 | |||||||||
WBPerson260 | |||||||||
Sequence_name | M6.1 | ||||||||
Molecular_name (19) | |||||||||
Other_name | Cel IF C2 | Accession_evidence | X70832 | ||||||
CelIF c2 | |||||||||
ecp-1 | Paper_evidence | WBPaper00057164 | |||||||
exc-2 | Person_evidence | WBPerson260 | |||||||
Curator_confirmed | WBPerson51134 | ||||||||
Date_last_updated | 07 Aug 2023 16:20:23 | ||||||||
CELE_M6.1 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | ifc-2 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 09 Mar 2021 13:49:30 | WBPerson1983 | Name_change | Other_name | ecp-1 | ||||
3 | 07 Aug 2023 16:03:35 | WBPerson51134 | Event | Acquires_merge | WBGene00001363 | ||||
4 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | ifc-2 | ||||
Other_name | exc-2 | ||||||||
Acquires_merge | WBGene00001363 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ifc | ||||||||
Allele (153) | |||||||||
Legacy_information | [Buechner M] exc for excretory canal defect. Canals are very short and consist of a series of vacuoles. 100% penetrant. Usually visible by low-power microscopy. | ||||||||
[C.elegansII] rh90 : excretory canal defect. Canals are very short and consist of a series of vacuoles. Luminal coat partly detached, floats in canal.100% penetrant.Usually visible by low-power microscopy. Affects tail spike ??? OA1: rh105. [NJ] | |||||||||
Strain (3) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (61) | |||||||||
Paralog (12) | |||||||||
Structured_description | Concise_description | ifc-2 encodes three isoforms of an intermediate filament protein dispensable for viability but required for normal movement, growth rate, body size, body shape, and cuticle strength; IFC-2 is present in the cytoplasm of intestinal cells, and at the desmosomes of intestinal and pharyngeal cells. | Paper_evidence | WBPaper00001981 | |||||
WBPaper00004761 | |||||||||
WBPaper00005492 | |||||||||
WBPaper00006137 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cytoskeleton. Involved in post-embryonic digestive tract morphogenesis. Located in cytoplasm and desmosome. Expressed in several structures, including excretory canal; pharyngeal-intestinal valve; pharynx; rectal valve cell; and uterus. Human ortholog(s) of this gene implicated in several diseases, including Dowling-Degos disease; ichthyosis (multiple); and palmoplantar keratosis (multiple). Is an ortholog of several human genes including KRT1 (keratin 1); KRT2 (keratin 2); and KRT3 (keratin 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model (14) | ||||||||
Molecular_info | Corresponding_CDS | M6.1a | |||||||
M6.1b | |||||||||
M6.1c | |||||||||
M6.1d | |||||||||
M6.1e | |||||||||
M6.1f | |||||||||
Corresponding_CDS_history | M6.1a:wp272 | ||||||||
M6.1b:wp272 | |||||||||
M6.1c:wp272 | |||||||||
Corresponding_transcript | M6.1a.1 | ||||||||
M6.1a.2 | |||||||||
M6.1b.1 | |||||||||
M6.1c.1 | |||||||||
M6.1d.1 | |||||||||
M6.1e.1 | |||||||||
M6.1f.1 | |||||||||
Other_sequence | CR07924 | ||||||||
FD516689.1 | |||||||||
CBC09732_1 | |||||||||
CJC02211_1 | |||||||||
CBC03886_1 | |||||||||
CSC00034_1 | |||||||||
CRC05750_1 | |||||||||
Associated_feature (13) | |||||||||
Experimental_info | RNAi_result (27) | ||||||||
Expr_pattern (17) | |||||||||
Drives_construct | WBCnstr00003372 | ||||||||
WBCnstr00036488 | |||||||||
WBCnstr00042147 | |||||||||
WBCnstr00042148 | |||||||||
WBCnstr00042149 | |||||||||
Construct_product | WBCnstr00036488 | ||||||||
WBCnstr00042019 | |||||||||
WBCnstr00042020 | |||||||||
WBCnstr00042147 | |||||||||
Antibody | WBAntibody00000563 | ||||||||
WBAntibody00002893 | |||||||||
WBAntibody00002913 | |||||||||
Microarray_results (39) | |||||||||
Expression_cluster (285) | |||||||||
Interaction (77) | |||||||||
Map_info | Map | X | Position | -19.5186 | Error | 0.005743 | |||
Positive | Positive_clone | M6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4971 | |||||||
Pseudo_map_position | |||||||||
Reference (41) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |