WormBase Tree Display for Gene: WBGene00002054
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| WBGene00002054 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F10C1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ifb-2 | Person_evidence | WBPerson105 | |||||
| WBPerson293 | |||||||||
| Sequence_name | F10C1.7 | ||||||||
| Molecular_name | F10C1.7a | ||||||||
| F10C1.7a.1 | |||||||||
| CE02622 | |||||||||
| F10C1.7c | |||||||||
| CE27941 | |||||||||
| F10C1.7e | |||||||||
| CE48309 | |||||||||
| F10C1.7c.1 | |||||||||
| F10C1.7e.1 | |||||||||
| Other_name | IF b2 | Accession_evidence | EMBL | X78553 | |||||
| CelIF b2 | |||||||||
| CELE_F10C1.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | ifb-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ifb | ||||||||
| Allele (87) | |||||||||
| Strain | WBStrain00036909 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Contained_in_operon | CEOP2220 | ||||||||
| Ortholog (61) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | ifb-2 encodes an intermediate filament protein; IFB-2 is expressed exclusively in the intestine and functions as a structural component of the intestinal terminal web; within the terminal web, IFB-2 localizes to a discrete substructure known as the endotube. | Paper_evidence | WBPaper00001981 | |||||
| WBPaper00004761 | |||||||||
| WBPaper00040246 | |||||||||
| WBPaper00040999 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 31 Mar 2014 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in cellular localization; heterochromatin formation; and nucleus organization. Located in apical cortex; cell junction; and terminal web. Expressed in intestine. Human ortholog(s) of this gene implicated in partial lipodystrophy; primary autosomal recessive microcephaly; and progressive myoclonus epilepsy 9. Is an ortholog of human LMNB2 (lamin B2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111450 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6638) | ||||
| DOID:0070296 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6638) | ||||||
| DOID:0080299 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6638) | ||||||
| Molecular_info | Corresponding_CDS | F10C1.7a | |||||||
| F10C1.7c | |||||||||
| F10C1.7e | |||||||||
| Corresponding_CDS_history | F10C1.7b:wp86 | ||||||||
| F10C1.7d:wp86 | |||||||||
| Corresponding_transcript | F10C1.7a.1 | ||||||||
| F10C1.7c.1 | |||||||||
| F10C1.7e.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf644222 | ||||||||
| WBsf657615 | |||||||||
| WBsf716987 | |||||||||
| WBsf987950 | |||||||||
| WBsf987951 | |||||||||
| WBsf221327 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062660 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030750 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044220 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007219 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062659 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062648 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113732 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065111 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062647 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113728 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00000753 | ||||||||
| WBCnstr00008798 | |||||||||
| WBCnstr00008801 | |||||||||
| WBCnstr00036490 | |||||||||
| Construct_product | WBCnstr00000753 | ||||||||
| WBCnstr00009121 | |||||||||
| WBCnstr00036490 | |||||||||
| WBCnstr00038174 | |||||||||
| WBCnstr00038430 | |||||||||
| Antibody | WBAntibody00000056 | ||||||||
| WBAntibody00000795 | |||||||||
| WBAntibody00002280 | |||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (271) | |||||||||
| Interaction (109) | |||||||||
| Map_info | Map | II | Position | -0.954772 | Error | 0.000663 | |||
| Positive | Positive_clone | F10C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (34) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
