WormBase Tree Display for Gene: WBGene00002046
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| WBGene00002046 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | icln-1 | |||||||
| Sequence_name | C01F6.8 | ||||||||
| Molecular_name | C01F6.8a | ||||||||
| C01F6.8a.1 | |||||||||
| CE17360 | |||||||||
| C01F6.8b | |||||||||
| CE30069 | |||||||||
| C01F6.8b.1 | |||||||||
| Other_name | ICln | ||||||||
| CELE_C01F6.8 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | icln-1 | ||||||||
| DB_info | Database | AceView | gene | 4J860 | |||||
| WormQTL | gene | WBGene00002046 | |||||||
| WormFlux | gene | WBGene00002046 | |||||||
| NDB | locus_tag | CELE_C01F6.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002046|UniProtKB=G5EG22 | |||||||
| family | PTHR21399 | ||||||||
| NCBI | gene | 177730 | |||||||
| RefSeq | protein | NM_001026117.4 | |||||||
| NM_001392361.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF315155 | |||||||
| TrEMBL | UniProtAcc | G5EFZ5 | |||||||
| G5EG22 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EG22 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Nov 2010 14:18:40 | WBPerson2970 | Name_change | CGC_name | icln-1 | ||||
| Other_name | icl-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | icln | ||||||||
| Allele (17) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP4324 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Concise_description | icln-1 encodes, through alternative splicing, two alternative forms (ICL-1A, or 'IClnN1', and ICL-1B, or 'IClnN2'), with distinct electrophysiological properties, of an anion channel homolog. | Paper_evidence | WBPaper00005113 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 19 Nov 2010 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in mRNA cis splicing, via spliceosome and spliceosomal snRNP assembly. Predicted to be located in cytosol. Predicted to be part of pICln-Sm protein complex and spliceosomal complex. Is an ortholog of human CLNS1A (chloride nucleotide-sensitive channel 1A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C01F6.8a | |||||||
| C01F6.8b | |||||||||
| Corresponding_CDS_history | C01F6.8:wp70 | ||||||||
| Corresponding_transcript | C01F6.8a.1 | ||||||||
| C01F6.8b.1 | |||||||||
| Other_sequence | CR01545 | ||||||||
| CJC15635_1 | |||||||||
| CRC07902_1 | |||||||||
| CBC05644_1 | |||||||||
| Associated_feature | WBsf230511 | ||||||||
| WBsf230512 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1021313 | ||||||||
| Expr1031200 | |||||||||
| Expr1143429 | |||||||||
| Expr2012665 | |||||||||
| Expr2030901 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (106) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | IV | Position | 4.03787 | |||||
| Positive | Positive_clone | C01F6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005113 | ||||||||
| WBPaper00006402 | |||||||||
| WBPaper00006465 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
