WormBase Tree Display for Gene: WBGene00002030
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WBGene00002030 | SMap | S_parent | Sequence | CHROMOSOME_II | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | hst-3.1 | Person_evidence | WBPerson1831 | |||
WBPerson1705 | |||||||
Sequence_name | F40H3.5 | ||||||
Molecular_name | F40H3.5 | ||||||
F40H3.5.1 | |||||||
CE46574 | |||||||
Other_name | hst-3 | Person_evidence | WBPerson1831 | ||||
CELE_F40H3.5 | Accession_evidence | NDB | BX284602 | ||||
Public_name | hst-3.1 | ||||||
DB_info | Database | AceView | gene | 2G456 | |||
WormQTL | gene | WBGene00002030 | |||||
WormFlux | gene | WBGene00002030 | |||||
NDB | locus_tag | CELE_F40H3.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00002030|UniProtKB=Q9TZK5 | |||||
family | PTHR10605 | ||||||
NCBI | gene | 185573 | |||||
RefSeq | protein | NM_062829.3 | |||||
TrEMBL | UniProtAcc | Q9TZK5 | |||||
UniProt_GCRP | UniProtAcc | Q9TZK5 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hst | ||||||
Allele (48) | |||||||
Strain | WBStrain00031901 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00098078 | ||||||
00098079 | |||||||
00098080 | |||||||
00098081 | |||||||
00109889 | |||||||
Ortholog (39) | |||||||
Paralog | WBGene00002028 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00044303 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Involved in heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi lumen. Expressed in several structures, including coelomocyte; distal tip cell; neurons; non-striated muscle; and rectal epithelial cell. Is an ortholog of human HS3ST1 (heparan sulfate-glucosamine 3-sulfotransferase 1) and HS3ST5 (heparan sulfate-glucosamine 3-sulfotransferase 5). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F40H3.5 | |||||
Corresponding_CDS_history | F40H3.5:wp228 | ||||||
Corresponding_transcript | F40H3.5.1 | ||||||
Other_sequence (14) | |||||||
Associated_feature (12) | |||||||
Experimental_info | RNAi_result | WBRNAi00014700 | Inferred_automatically | RNAi_primary | |||
WBRNAi00115295 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00024024 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023738 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023226 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046921 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023461 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr10713 | ||||||
Expr11890 | |||||||
Expr1023701 | |||||||
Expr1031185 | |||||||
Expr1150791 | |||||||
Expr2012635 | |||||||
Expr2030871 | |||||||
Drives_construct | WBCnstr00017485 | ||||||
WBCnstr00019714 | |||||||
WBCnstr00019715 | |||||||
Microarray_results (27) | |||||||
Expression_cluster (117) | |||||||
Interaction | WBInteraction000275122 | ||||||
WBInteraction000433568 | |||||||
WBInteraction000524033 | |||||||
Map_info | Map | II | Position | -0.414104 | Error | 0.001298 | |
Positive | Positive_clone | F40H3 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (19) | |||||||
Remark | Sequence connection from [Turnbull J, Kinnunen T]. krb 13/11/01 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |