WormBase Tree Display for Gene: WBGene00002030

WBGene00002030 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: hst-3.1 Person_evidence: WBPerson1831
            WBPerson1705
      Sequence_name: F40H3.5
      Molecular_name: F40H3.5
        F40H3.5.1
        CE46574
      Other_name: hst-3 Person_evidence: WBPerson1831
        CELE_F40H3.5 Accession_evidence: NDB BX284602
      Public_name: hst-3.1
    DB_info: Database: AceView gene 2G456
        WormQTL gene WBGene00002030
        WormFlux gene WBGene00002030
        NDB locus_tag CELE_F40H3.5
        Panther gene CAEEL|WormBase=WBGene00002030|UniProtKB=Q9TZK5
          family PTHR10605
        NCBI gene 185573
        RefSeq protein NM_062829.3
        TrEMBL UniProtAcc Q9TZK5
        UniProt_GCRP UniProtAcc Q9TZK5
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 21 Sep 2006 11:29:48 WBPerson1857 Name_change: Other_name: hst-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hst
    Allele (48)
    Strain: WBStrain00031901
    RNASeq_FPKM (74)
    GO_annotation: 00098078
      00098079
      00098080
      00098081
      00109889
    Ortholog: WBGene00054015 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025609 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00164696 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00126186 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153708 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00058222 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00128013 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00224241 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12609 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10648 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13864 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1425 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12497 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27048 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1622 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19179 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g16013 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g23888 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8637 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-hst-3.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16447 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00245.g7849 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_04476 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006186 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g7820 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20125700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4696 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246841 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00277527 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266931 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290121 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0053147 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-070202-3 Danio rerio From_analysis: OMA
            OrthoFinder
            Panther
      HGNC:5194 Homo sapiens From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:19419 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1201606 Mus musculus From_analysis: OMA
            OrthoFinder
            OrthoInspector
            Panther
      MGI:2441996 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      RGD:71084 Rattus norvegicus From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1306379 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00002028 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00044303 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Involved in heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi lumen. Expressed in several structures, including coelomocyte; distal tip cell; neurons; non-striated muscle; and rectal epithelial cell. Is an ortholog of human HS3ST1 (heparan sulfate-glucosamine 3-sulfotransferase 1) and HS3ST5 (heparan sulfate-glucosamine 3-sulfotransferase 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F40H3.5
    Corresponding_CDS_history: F40H3.5:wp228
    Corresponding_transcript: F40H3.5.1
    Other_sequence (14)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00014700 Inferred_automatically: RNAi_primary
      WBRNAi00115295 Inferred_automatically: RNAi_primary
      WBRNAi00024024 Inferred_automatically: RNAi_primary
      WBRNAi00023738 Inferred_automatically: RNAi_primary
      WBRNAi00023226 Inferred_automatically: RNAi_primary
      WBRNAi00046921 Inferred_automatically: RNAi_primary
      WBRNAi00023461 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10713
      Expr11890
      Expr1023701
      Expr1031185
      Expr1150791
      Expr2012635
      Expr2030871
    Drives_construct: WBCnstr00017485
      WBCnstr00019714
      WBCnstr00019715
    Microarray_results (27)
    Expression_cluster (117)
    Interaction: WBInteraction000275122
      WBInteraction000433568
      WBInteraction000524033
  Map_info: Map: II Position: -0.414104 Error: 0.001298
    Positive: Positive_clone: F40H3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (19)
  Remark: Sequence connection from [Turnbull J, Kinnunen T]. krb 13/11/01
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene