WormBase Tree Display for Gene: WBGene00002020
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WBGene00002020 | SMap | S_parent | Sequence | T27E4 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hsp | ||||||
Allele | WBVar01499903 | ||||||
WBVar01500129 | |||||||
WBVar01499419 | |||||||
WBVar01499420 | |||||||
WBVar01499056 | |||||||
WBVar01499249 | |||||||
WBVar00250229 | |||||||
WBVar01499316 | |||||||
In_cluster | HSP16A | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00105708 | ||||||
00105759 | |||||||
00106140 | |||||||
Ortholog (88) | |||||||
Paralog (17) | |||||||
Structured_description | Concise_description | hsp-16.49 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.48; HSP-16.49 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. | Paper_evidence | WBPaper00004424 | |||
WBPaper00013029 | |||||||
WBPaper00013239 | |||||||
WBPaper00013280 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable unfolded protein binding activity. Involved in endoplasmic reticulum unfolded protein response. Human ortholog(s) of this gene implicated in cataract 9 multiple types. Is an ortholog of human CRYAA (crystallin alpha A). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0110266 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2388) | ||
Molecular_info | Corresponding_CDS | T27E4.9 | |||||
Corresponding_transcript | T27E4.9.1 | ||||||
Other_sequence (109) | |||||||
Associated_feature | WBsf234179 | ||||||
Experimental_info | RNAi_result | WBRNAi00093732 | Inferred_automatically | RNAi_primary | |||
WBRNAi00063167 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00106385 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00106384 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1157863 | ||||||
Expr2012621 | |||||||
Expr2030857 | |||||||
Drives_construct | WBCnstr00010087 | ||||||
WBCnstr00036516 | |||||||
Construct_product | WBCnstr00036516 | ||||||
Antibody | WBAntibody00001859 | ||||||
Microarray_results | SMD_T27E4.9 | ||||||
Aff_T27E4.3 | |||||||
Expression_cluster (159) | |||||||
Interaction (28) | |||||||
Map_info | Map | V | Position | 1.9262 | Error | 0.001695 | |
Positive | Positive_clone | T27E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4419 | |||||
Pseudo_map_position | |||||||
Reference (61) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |