WormBase Tree Display for Gene: WBGene00002020
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| WBGene00002020 | SMap | S_parent | Sequence | T27E4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hsp-16.49 | Person_evidence | WBPerson36 | |||||
| Sequence_name | T27E4.9 | ||||||||
| Molecular_name | T27E4.9 | ||||||||
| T27E4.9.1 | |||||||||
| CE14251 | |||||||||
| Other_name | hsp-16 | ||||||||
| CELE_T27E4.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | hsp-16.49 | ||||||||
| DB_info | Database | AceView | gene | 5J570 | |||||
| WormFlux | gene | WBGene00002020 | |||||||
| NDB | locus_tag | CELE_T27E4.9 | |||||||
| NCBI | gene | 179288 | |||||||
| RefSeq | protein | NM_072955.3 | |||||||
| SwissProt | UniProtAcc | P02513 | |||||||
| UniProt_GCRP | UniProtAcc | P02513 | |||||||
| OMIM | gene | 123580 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hsp | ||||||||
| Allele | WBVar01499903 | ||||||||
| WBVar01500129 | |||||||||
| WBVar01499419 | |||||||||
| WBVar01499420 | |||||||||
| WBVar01499056 | |||||||||
| WBVar01499249 | |||||||||
| WBVar00250229 | |||||||||
| WBVar01499316 | |||||||||
| In_cluster | HSP16A | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00105708 | ||||||||
| 00105759 | |||||||||
| 00106140 | |||||||||
| Ortholog (88) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | hsp-16.49 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.48; HSP-16.49 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. | Paper_evidence | WBPaper00004424 | |||||
| WBPaper00013029 | |||||||||
| WBPaper00013239 | |||||||||
| WBPaper00013280 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Involved in endoplasmic reticulum unfolded protein response. Human ortholog(s) of this gene implicated in cataract 9 multiple types. Is an ortholog of human CRYAA (crystallin alpha A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110266 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2388) | ||||
| Molecular_info | Corresponding_CDS | T27E4.9 | |||||||
| Corresponding_transcript | T27E4.9.1 | ||||||||
| Other_sequence | CR11733 | ||||||||
| Dviv_isotig13013 | |||||||||
| FM207717.1 | |||||||||
| Dviv_isotig16414 | |||||||||
| DN191217.1 | |||||||||
| AE01385 | |||||||||
| AM743383.1 | |||||||||
| OOC00361_1 | |||||||||
| EX536181.1 | |||||||||
| AI151705.1 | |||||||||
| EX540504.1 | |||||||||
| CSC02236_1 | |||||||||
| Dviv_isotig00086 | |||||||||
| HBC02326_1 | |||||||||
| NBC00022_2 | |||||||||
| Dviv_isotig00093 | |||||||||
| CRC01136_1 | |||||||||
| CR02466 | |||||||||
| Dviv_isotig12704 | |||||||||
| Acan_isotig12066 | |||||||||
| AE01402 | |||||||||
| AJ310811.2 | |||||||||
| BF064351.1 | |||||||||
| Dviv_isotig08762 | |||||||||
| Dviv_isotig13012 | |||||||||
| NB07476 | |||||||||
| Dviv_isotig00092 | |||||||||
| CR02273 | |||||||||
| Dviv_contig19752 | |||||||||
| HCC13054_1 | |||||||||
| Dviv_isotig00095 | |||||||||
| HC05634 | |||||||||
| Name_isotig02179 | |||||||||
| Hbac_isotig00119 | |||||||||
| AE01377 | |||||||||
| AI077031.1 | |||||||||
| EX549149.1 | |||||||||
| AI511597.1 | |||||||||
| AYC00012_2 | |||||||||
| Dviv_isotig08761 | |||||||||
| AI066925.1 | |||||||||
| NBC00022_1 | |||||||||
| CB037312.1 | |||||||||
| CB039104.1 | |||||||||
| Dviv_isotig12703 | |||||||||
| AYC00359_1 | |||||||||
| CB038670.1 | |||||||||
| DN190972.1 | |||||||||
| AYC00359_2 | |||||||||
| CBC03560_1 | |||||||||
| TDC01610_1 | |||||||||
| AYC01614_1 | |||||||||
| ES744459.1 | |||||||||
| Oden_isotig12485 | |||||||||
| Tcol_isotig05430 | |||||||||
| FD515506.1 | |||||||||
| HCC07453_1 | |||||||||
| EX550621.1 | |||||||||
| Dviv_isotig00096 | |||||||||
| OVC04013_1 | |||||||||
| AE01291 | |||||||||
| EX567090.1 | |||||||||
| GO239209.1 | |||||||||
| Dviv_isotig00088 | |||||||||
| Tcol_isotig05429 | |||||||||
| NB07995 | |||||||||
| Tcir_isotig13245 | |||||||||
| Hbac_isotig00120 | |||||||||
| DN191211.1 | |||||||||
| DVC02732_1 | |||||||||
| HC09591 | |||||||||
| CJC04799_1 | |||||||||
| Dviv_isotig00090 | |||||||||
| CRC02578_1 | |||||||||
| GO239208.1 | |||||||||
| Oden_isotig12486 | |||||||||
| FG588787.1 | |||||||||
| EV852334.1 | |||||||||
| Dviv_isotig08763 | |||||||||
| AYC04595_1 | |||||||||
| HM017960.1 | |||||||||
| CJC01488_1 | |||||||||
| AE00061 | |||||||||
| DN190605.1 | |||||||||
| Dviv_isotig08760 | |||||||||
| CRC10398_1 | |||||||||
| CB037167.1 | |||||||||
| Dviv_isotig00089 | |||||||||
| TDC00504_2 | |||||||||
| AYC00012_3 | |||||||||
| Dviv_isotig16415 | |||||||||
| AE00081 | |||||||||
| DN190154.1 | |||||||||
| HC01928 | |||||||||
| CB036293.1 | |||||||||
| AE01113 | |||||||||
| Dviv_isotig00091 | |||||||||
| AE00033 | |||||||||
| Oden_isotig12487 | |||||||||
| AAC00096_1 | |||||||||
| AE01085 | |||||||||
| JK315785.1 | |||||||||
| Dviv_isotig00094 | |||||||||
| AI249216.1 | |||||||||
| CB036416.1 | |||||||||
| Dviv_isotig12705 | |||||||||
| Dviv_isotig00097 | |||||||||
| Dviv_isotig00087 | |||||||||
| ACC21317_1 | |||||||||
| Associated_feature | WBsf234179 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00093732 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00063167 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106385 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106384 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1157863 | ||||||||
| Expr2012621 | |||||||||
| Expr2030857 | |||||||||
| Drives_construct | WBCnstr00010087 | ||||||||
| WBCnstr00036516 | |||||||||
| Construct_product | WBCnstr00036516 | ||||||||
| Antibody | WBAntibody00001859 | ||||||||
| Microarray_results | SMD_T27E4.9 | ||||||||
| Aff_T27E4.3 | |||||||||
| Expression_cluster (159) | |||||||||
| Interaction (28) | |||||||||
| Map_info | Map | V | Position | 1.9262 | Error | 0.001695 | |||
| Positive | Positive_clone | T27E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4419 | |||||||
| Pseudo_map_position | |||||||||
| Reference (61) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
