WormBase Tree Display for Gene: WBGene00001955
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| WBGene00001955 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F58A4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | hlh-11 | Person_evidence | WBPerson346 | |||||
| Sequence_name | F58A4.7 | ||||||||
| Molecular_name (14) | |||||||||
| Other_name | CELE_F58A4.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | hlh-11 | ||||||||
| DB_info | Database | AceView | gene | 3K715 | |||||
| WormQTL | gene | WBGene00001955 | |||||||
| WormFlux | gene | WBGene00001955 | |||||||
| NDB | locus_tag | CELE_F58A4.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001955|UniProtKB=P34474 | |||||||
| family | PTHR15741 | ||||||||
| NCBI | gene | 176360 | |||||||
| RefSeq | protein | NM_001379865.2 | |||||||
| NM_066728.8 | |||||||||
| NM_066729.10 | |||||||||
| SwissProt | UniProtAcc | P34474 | |||||||
| TREEFAM | TREEFAM_ID | TF316489 | |||||||
| UniProt_GCRP | UniProtAcc | P34474 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hlh | ||||||||
| Allele (90) | |||||||||
| Strain | WBStrain00032859 | ||||||||
| WBStrain00030583 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042552 | ||||||||
| 00042553 | |||||||||
| 00042554 | |||||||||
| 00042555 | |||||||||
| 00042556 | |||||||||
| 00042557 | |||||||||
| 00042558 | |||||||||
| 00109807 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00003510 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003378 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including excretory cell; intestinal cell; male-specific anatomical entity; non-striated muscle; and somatic nervous system. Is an ortholog of human TFAP4 (transcription factor AP-4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58A4.7a | |||||||
| F58A4.7b | |||||||||
| F58A4.7d | |||||||||
| Corresponding_CDS_history | F58A4.7a:wp88 | ||||||||
| F58A4.7b:wp88 | |||||||||
| F58A4.7c:wp275 | |||||||||
| Corresponding_transcript | F58A4.7a.1 | ||||||||
| F58A4.7a.2 | |||||||||
| F58A4.7b.1 | |||||||||
| F58A4.7b.2 | |||||||||
| F58A4.7b.3 | |||||||||
| F58A4.7b.4 | |||||||||
| F58A4.7d.1 | |||||||||
| F58A4.7d.2 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature (16) | |||||||||
| Transcription_factor | WBTranscriptionFactor000068 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00106987 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048934 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115659 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033064 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015934 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005984 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001428 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00087728 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12824 | ||||||||
| Expr15663 | |||||||||
| Expr15976 | |||||||||
| Expr1012609 | |||||||||
| Expr1031137 | |||||||||
| Expr1152672 | |||||||||
| Expr1200145 | |||||||||
| Expr2012491 | |||||||||
| Expr2030730 | |||||||||
| Drives_construct | WBCnstr00016793 | ||||||||
| WBCnstr00018615 | |||||||||
| WBCnstr00022887 | |||||||||
| WBCnstr00022888 | |||||||||
| WBCnstr00036563 | |||||||||
| WBCnstr00042427 | |||||||||
| Construct_product | WBCnstr00016793 | ||||||||
| WBCnstr00016890 | |||||||||
| WBCnstr00017353 | |||||||||
| WBCnstr00022888 | |||||||||
| WBCnstr00036563 | |||||||||
| WBCnstr00042427 | |||||||||
| Regulate_expr_cluster | WBPaper00060683:hlh-11(ko1)_downregulated | ||||||||
| WBPaper00060683:hlh-11(ko1)_upregulated | |||||||||
| WBPaper00060683:hlh-11(overexpression)_downregulated | |||||||||
| WBPaper00060683:hlh-11(overexpression)_upregulated | |||||||||
| Microarray_results (40) | |||||||||
| Expression_cluster (206) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | III | Position | 0.788189 | Error | 0.007563 | |||
| Positive | Positive_clone | F58A4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
