WormBase Tree Display for Gene: WBGene00001922
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| WBGene00001922 | SMap | S_parent | Sequence | B0035 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | his-48 | Person_evidence | WBPerson160 | |||||
| Sequence_name | B0035.8 | ||||||||
| Molecular_name | B0035.8 | ||||||||
| B0035.8.1 | |||||||||
| CE05165 | |||||||||
| Other_name | CELE_B0035.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | his-48 | ||||||||
| DB_info | Database | AceView | gene | 4M89 | |||||
| WormQTL | gene | WBGene00001922 | |||||||
| WormFlux | gene | WBGene00001922 | |||||||
| NDB | locus_tag | CELE_B0035.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001922|UniProtKB=Q27876 | |||||||
| family | PTHR23428 | ||||||||
| NCBI | gene | 178049 | |||||||
| RefSeq | protein | NM_069731.6 | |||||||
| SwissProt | UniProtAcc | Q27876 | |||||||
| UniProt_GCRP | UniProtAcc | Q27876 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | his | ||||||||
| Allele | WBVar02158290 | ||||||||
| WBVar01500079 | |||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar01498645 | |||||||||
| WBVar01499585 | |||||||||
| WBVar01499586 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (156) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Concise_description | his-48 encodes an H2B histone; by homology, HIS-48 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-48 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. | Paper_evidence | WBPaper00005142 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Involved in innate immune response. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Expressed in gonad. Is an ortholog of several human genes including H2BC3 (H2B clustered histone 3); H2BC5 (H2B clustered histone 5); and H2BC8 (H2B clustered histone 8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0035.8 | |||||||
| Corresponding_transcript | B0035.8.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf660700 | ||||||||
| WBsf229144 | |||||||||
| WBsf229145 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr4003 | ||||||||
| Expr5018 | |||||||||
| Expr1028181 | |||||||||
| Expr1031123 | |||||||||
| Expr1142889 | |||||||||
| Expr2012462 | |||||||||
| Expr2030700 | |||||||||
| Drives_construct | WBCnstr00002670 | ||||||||
| WBCnstr00036593 | |||||||||
| Construct_product | WBCnstr00007583 | ||||||||
| WBCnstr00036593 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (166) | |||||||||
| Interaction (244) | |||||||||
| Map_info | Map | IV | Position | 4.9585 | |||||
| Positive | Positive_clone | B0035 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00019149 | ||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
