WormBase Tree Display for Gene: WBGene00001889
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WBGene00001889 | SMap | S_parent | Sequence | ZK131 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | his | |||||
Allele | WBVar01499702 | |||||
WBVar01498435 | ||||||
WBVar01498941 | ||||||
Legacy_information | [C.elegansII] NMK. Histone type H2B. HIS3 cluster. [Roberts et al. 1989; EM] | |||||
In_cluster | HIS3_cluster | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00106123 | |||||
00109582 | ||||||
00109583 | ||||||
00109584 | ||||||
00109585 | ||||||
Ortholog (199) | ||||||
Paralog (16) | ||||||
Structured_description | Concise_description | his-15 encodes an H2B histone. | Curator_confirmed | WBPerson567 | ||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||
Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Involved in innate immune response. Predicted to be part of nucleosome. Is an ortholog of several human genes including H2BC12 (H2B clustered histone 12); H2BC17 (H2B clustered histone 17); and H2BC3 (H2B clustered histone 3). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | ZK131.9 | ||||
Corresponding_transcript | ZK131.9.1 | |||||
Other_sequence | MC00785 | |||||
MCC03885_1 | ||||||
GO252435.1 | ||||||
GO251777.1 | ||||||
Associated_feature | WBsf222394 | |||||
Experimental_info | RNAi_result (17) | |||||
Expr_pattern | Expr1162657 | |||||
Microarray_results (24) | ||||||
Expression_cluster (113) | ||||||
SAGE_tag | SAGE:gctttggaggaaactcc | Strand | Antisense | |||
SAGE:aactcttttg | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:aactcttttgtcaacga | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:acgtctcttctttccgt | Strand | Antisense | ||||
SAGE:acgtctcttc | Strand | Antisense | ||||
Interaction (207) | ||||||
Map_info | Map | II | Position | 20.2996 | ||
Positive | Positive_clone | ZK131 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
ZK831 | ||||||
Pseudo_map_position | ||||||
Reference | WBPaper00001150 | |||||
WBPaper00005142 | ||||||
WBPaper00005182 | ||||||
WBPaper00038491 | ||||||
WBPaper00055090 | ||||||
WBPaper00057125 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |