WormBase Tree Display for Gene: WBGene00001889
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WBGene00001889 | SMap | S_parent | Sequence | ZK131 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | his-15 | Person_evidence | WBPerson160 | |||||
Sequence_name | ZK131.9 | ||||||||
Molecular_name | ZK131.9 | ||||||||
ZK131.9.1 | |||||||||
CE07075 | |||||||||
Other_name | CELE_ZK131.9 | Accession_evidence | NDB | BX284602 | |||||
Public_name | his-15 | ||||||||
DB_info | Database | AceView | gene | 2O109 | |||||
WormFlux | gene | WBGene00001889 | |||||||
NDB | locus_tag | CELE_ZK131.9 | |||||||
NCBI | gene | 175026 | |||||||
RefSeq | protein | NM_064487.1 | |||||||
SwissProt | UniProtAcc | P04255 | |||||||
UniProt_GCRP | UniProtAcc | P04255 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | his | ||||||||
Allele (3) | |||||||||
Legacy_information | [C.elegansII] NMK. Histone type H2B. HIS3 cluster. [Roberts et al. 1989; EM] | ||||||||
In_cluster | HIS3_cluster | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00106123 | ||||||||
00109582 | |||||||||
00109583 | |||||||||
00109584 | |||||||||
00109585 | |||||||||
Ortholog (199) | |||||||||
Paralog (16) | |||||||||
Structured_description | Concise_description | his-15 encodes an H2B histone. | Curator_confirmed | WBPerson567 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Involved in innate immune response. Predicted to be part of nucleosome. Is an ortholog of several human genes including H2BC12 (H2B clustered histone 12); H2BC17 (H2B clustered histone 17); and H2BC3 (H2B clustered histone 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK131.9 | |||||||
Corresponding_transcript | ZK131.9.1 | ||||||||
Other_sequence | MC00785 | ||||||||
MCC03885_1 | |||||||||
GO252435.1 | |||||||||
GO251777.1 | |||||||||
Associated_feature | WBsf222394 | ||||||||
Experimental_info | RNAi_result (17) | ||||||||
Expr_pattern | Expr1162657 | ||||||||
Microarray_results | SMD_ZK131.5 | ||||||||
SMD_ZK131.9 | |||||||||
192280_s_at | |||||||||
A_12_P140170 | |||||||||
Aff_ZK131.5 | |||||||||
GPL14144_F08G2.1_26-85_0.927_5_A | |||||||||
GPL19516_CGZ0014953 | |||||||||
GPL19516_CGZ0019847 | |||||||||
GPL19516_CGZ0056428 | |||||||||
GPL21109_F08G2.1 | |||||||||
GPL21109_ZK131.5 | |||||||||
GPL8304_CE_WBGene00001885_A | |||||||||
GPL8304_CE_WBGene00001889_A | |||||||||
GPL8304_CE_WBGene00001889_C | |||||||||
GPL8304_CE_WBGene00001918_A | |||||||||
GPL8673_F08G2_1P00077 | |||||||||
GPL8673_F08G2_1P00182 | |||||||||
GPL8673_F08G2_1P00244 | |||||||||
GPL8673_ZK131_5P00077 | |||||||||
GPL8673_ZK131_5P00182 | |||||||||
GPL8673_ZK131_5P00244 | |||||||||
GPL8673_ZK131_9P00077 | |||||||||
GPL8673_ZK131_9P00182 | |||||||||
GPL8673_ZK131_9P00244 | |||||||||
Expression_cluster (113) | |||||||||
SAGE_tag | SAGE:gctttggaggaaactcc | Strand | Antisense | ||||||
SAGE:aactcttttg | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:aactcttttgtcaacga | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:acgtctcttctttccgt | Strand | Antisense | |||||||
SAGE:acgtctcttc | Strand | Antisense | |||||||
Interaction (207) | |||||||||
Map_info | Map | II | Position | 20.2996 | |||||
Positive | Positive_clone | ZK131 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
ZK831 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001150 | ||||||||
WBPaper00005142 | |||||||||
WBPaper00005182 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00057125 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |