WormBase Tree Display for Gene: WBGene00001725
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| WBGene00001725 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y65B4BR | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-16 | Person_evidence | WBPerson83 | |||||
| Sequence_name | Y65B4BR.6 | ||||||||
| Molecular_name | Y65B4BR.6a | ||||||||
| Y65B4BR.6a.1 | |||||||||
| CE25541 | |||||||||
| Y65B4BR.6b | |||||||||
| CE33240 | |||||||||
| Y65B4BR.6b.1 | |||||||||
| Other_name | Y65B4BR.m | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y65B4BR.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | grl-16 | ||||||||
| DB_info | Database | AceView | gene | 1B46 | |||||
| WormQTL | gene | WBGene00001725 | |||||||
| WormFlux | gene | WBGene00001725 | |||||||
| NDB | locus_tag | CELE_Y65B4BR.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001725|UniProtKB=H2L083 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 171649 | |||||||
| RefSeq | protein | NM_182075.3 | |||||||
| NM_058353.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF315611 | |||||||
| TrEMBL | UniProtAcc | Q9N2Z3 | |||||||
| H2L083 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L083 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (84) | |||||||||
| Strain | WBStrain00032865 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-16 encodes, by alternative splicing, two hedgehog-like proteins withan N-terminal signal sequence, a central proline-rich low-complexityregion, and a C-terminal Ground-like (Grl) domain; the Grl domain ispredicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including arc ant V; germ line; hypodermis; neurons; and rectal epithelial cell based on proteomic; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-four chemicals including hydrogen sulfide; 1-methylnicotinamide; and nicotinic acid based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y65B4BR.6a | |||||||
| Y65B4BR.6b | |||||||||
| Corresponding_CDS_history | Y65B4BR.6c:wp272 | ||||||||
| Corresponding_transcript | Y65B4BR.6a.1 | ||||||||
| Y65B4BR.6b.1 | |||||||||
| Other_sequence (97) | |||||||||
| Associated_feature | WBsf648911 | ||||||||
| WBsf663874 | |||||||||
| WBsf717443 | |||||||||
| WBsf982538 | |||||||||
| WBsf982539 | |||||||||
| WBsf982540 | |||||||||
| WBsf1009099 | |||||||||
| WBsf1009100 | |||||||||
| WBsf218920 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037711 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr4423 | ||||||||
| Expr1018184 | |||||||||
| Expr1031030 | |||||||||
| Expr1161350 | |||||||||
| Expr2012250 | |||||||||
| Expr2030486 | |||||||||
| Drives_construct | WBCnstr00011985 | ||||||||
| WBCnstr00036736 | |||||||||
| Construct_product | WBCnstr00036736 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (308) | |||||||||
| Interaction | WBInteraction000543998 | ||||||||
| Map_info | Map | I | Position | -18.9281 | Error | 0.004756 | |||
| Positive | Positive_clone | Y65B4BR | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028754 | ||||||||
| WBPaper00031588 | |||||||||
| WBPaper00050709 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
