WormBase Tree Display for Gene: WBGene00001725
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| WBGene00001725 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y65B4BR | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-16 | Person_evidence | WBPerson83 | |||||
| Sequence_name | Y65B4BR.6 | ||||||||
| Molecular_name | Y65B4BR.6a | ||||||||
| Y65B4BR.6a.1 | |||||||||
| CE25541 | |||||||||
| Y65B4BR.6b | |||||||||
| CE33240 | |||||||||
| Y65B4BR.6b.1 | |||||||||
| Other_name | Y65B4BR.m | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y65B4BR.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | grl-16 | ||||||||
| DB_info | Database | AceView | gene | 1B46 | |||||
| WormQTL | gene | WBGene00001725 | |||||||
| WormFlux | gene | WBGene00001725 | |||||||
| NDB | locus_tag | CELE_Y65B4BR.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001725|UniProtKB=H2L083 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 171649 | |||||||
| RefSeq | protein | NM_182075.3 | |||||||
| NM_058353.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF315611 | |||||||
| TrEMBL | UniProtAcc | Q9N2Z3 | |||||||
| H2L083 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L083 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele | WBVar00607898 | ||||||||
| WBVar00607899 | |||||||||
| WBVar00607900 | |||||||||
| WBVar00607901 | |||||||||
| WBVar00607902 | |||||||||
| WBVar00607903 | |||||||||
| WBVar00607904 | |||||||||
| WBVar00607905 | |||||||||
| WBVar01341823 | |||||||||
| WBVar00254134 | |||||||||
| WBVar00095252 | |||||||||
| WBVar00607906 | |||||||||
| WBVar00607907 | |||||||||
| WBVar00607908 | |||||||||
| WBVar00607909 | |||||||||
| WBVar00607910 | |||||||||
| WBVar00607911 | |||||||||
| WBVar00607912 | |||||||||
| WBVar01640065 | |||||||||
| WBVar00607913 | |||||||||
| WBVar00094046 | |||||||||
| WBVar00607914 | |||||||||
| WBVar00607915 | |||||||||
| WBVar00607916 | |||||||||
| WBVar00607917 | |||||||||
| WBVar00607918 | |||||||||
| WBVar00607919 | |||||||||
| WBVar00607920 | |||||||||
| WBVar00607921 | |||||||||
| WBVar00607922 | |||||||||
| WBVar00607923 | |||||||||
| WBVar00607924 | |||||||||
| WBVar00607925 | |||||||||
| WBVar00607926 | |||||||||
| WBVar00607927 | |||||||||
| WBVar00607928 | |||||||||
| WBVar00607929 | |||||||||
| WBVar00147592 | |||||||||
| WBVar01680651 | |||||||||
| WBVar01680652 | |||||||||
| WBVar01680653 | |||||||||
| WBVar01761597 | |||||||||
| WBVar02125976 | |||||||||
| WBVar02125977 | |||||||||
| WBVar02125978 | |||||||||
| WBVar02125979 | |||||||||
| WBVar02125980 | |||||||||
| WBVar00003731 | |||||||||
| WBVar00003736 | |||||||||
| WBVar01930028 | |||||||||
| WBVar00252338 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01474584 | |||||||||
| WBVar00309568 | |||||||||
| WBVar01499619 | |||||||||
| WBVar01711368 | |||||||||
| WBVar01711369 | |||||||||
| WBVar01429833 | |||||||||
| WBVar02028095 | |||||||||
| WBVar01429834 | |||||||||
| WBVar00324476 | |||||||||
| WBVar00324477 | |||||||||
| WBVar00324478 | |||||||||
| WBVar00324479 | |||||||||
| WBVar00324480 | |||||||||
| WBVar00324481 | |||||||||
| WBVar00324482 | |||||||||
| WBVar00324483 | |||||||||
| WBVar00324484 | |||||||||
| WBVar00607884 | |||||||||
| WBVar00607885 | |||||||||
| WBVar00607886 | |||||||||
| WBVar00607887 | |||||||||
| WBVar00607888 | |||||||||
| WBVar00607889 | |||||||||
| WBVar01341712 | |||||||||
| WBVar00607890 | |||||||||
| WBVar00607891 | |||||||||
| WBVar00607892 | |||||||||
| WBVar00607893 | |||||||||
| WBVar00607894 | |||||||||
| WBVar00607895 | |||||||||
| WBVar00607896 | |||||||||
| WBVar00607897 | |||||||||
| Strain | WBStrain00032865 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-16 encodes, by alternative splicing, two hedgehog-like proteins withan N-terminal signal sequence, a central proline-rich low-complexityregion, and a C-terminal Ground-like (Grl) domain; the Grl domain ispredicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including arc ant V; germ line; hypodermis; neurons; and rectal epithelial cell based on proteomic; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-four chemicals including hydrogen sulfide; 1-methylnicotinamide; and nicotinic acid based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y65B4BR.6a | |||||||
| Y65B4BR.6b | |||||||||
| Corresponding_CDS_history | Y65B4BR.6c:wp272 | ||||||||
| Corresponding_transcript | Y65B4BR.6a.1 | ||||||||
| Y65B4BR.6b.1 | |||||||||
| Other_sequence (97) | |||||||||
| Associated_feature | WBsf648911 | ||||||||
| WBsf663874 | |||||||||
| WBsf717443 | |||||||||
| WBsf982538 | |||||||||
| WBsf982539 | |||||||||
| WBsf982540 | |||||||||
| WBsf1009099 | |||||||||
| WBsf1009100 | |||||||||
| WBsf218920 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037711 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr4423 | ||||||||
| Expr1018184 | |||||||||
| Expr1031030 | |||||||||
| Expr1161350 | |||||||||
| Expr2012250 | |||||||||
| Expr2030486 | |||||||||
| Drives_construct | WBCnstr00011985 | ||||||||
| WBCnstr00036736 | |||||||||
| Construct_product | WBCnstr00036736 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (308) | |||||||||
| Interaction | WBInteraction000543998 | ||||||||
| Map_info | Map | I | Position | -18.9281 | Error | 0.004756 | |||
| Positive | Positive_clone | Y65B4BR | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028754 | ||||||||
| WBPaper00031588 | |||||||||
| WBPaper00050709 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
