WormBase Tree Display for Gene: WBGene00001724
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| WBGene00001724 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y75B8A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-15 | Person_evidence | WBPerson83 | |||||
| Sequence_name | Y75B8A.20 | ||||||||
| Molecular_name | Y75B8A.20 | ||||||||
| Y75B8A.20.1 | |||||||||
| CE23031 | |||||||||
| Other_name | CELE_Y75B8A.20 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | grl-15 | ||||||||
| DB_info | Database | AceView | gene | 3N322 | |||||
| WormQTL | gene | WBGene00001724 | |||||||
| WormFlux | gene | WBGene00001724 | |||||||
| NDB | locus_tag | CELE_Y75B8A.20 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001724|UniProtKB=Q9XW83 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 190707 | |||||||
| RefSeq | protein | NM_067191.8 | |||||||
| TREEFAM | TREEFAM_ID | TF317463 | |||||||
| TrEMBL | UniProtAcc | Q9XW83 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XW83 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (164) | |||||||||
| Strain | WBStrain00033170 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (25) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-15 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; GRL-15 is expressed in the reproductivesystem, vulva, and larval hypodermis; the Grl domain is predicted toform a cysteine-crosslinked protein involved in intercellularsignalling, and it has subtle similarity to the N-terminal Hedge domainof HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in vulB1; vulB2; vulC; vulD; and vulE. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y75B8A.20 | |||||||
| Corresponding_transcript | Y75B8A.20.1 | ||||||||
| Other_sequence | FK806559.1 | ||||||||
| HBC25950_1 | |||||||||
| Dviv_isotig29987 | |||||||||
| FG972055.1 | |||||||||
| FD516055.1 | |||||||||
| CJC09735_1 | |||||||||
| CRC07593_1 | |||||||||
| Hbac_isotig00267 | |||||||||
| CSC01541_1 | |||||||||
| Associated_feature | WBsf651532 | ||||||||
| WBsf667510 | |||||||||
| WBsf667511 | |||||||||
| WBsf667512 | |||||||||
| WBsf227644 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006822 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058449 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4455 | ||||||||
| Expr7126 | |||||||||
| Expr1025287 | |||||||||
| Expr1031029 | |||||||||
| Expr1161866 | |||||||||
| Expr2012249 | |||||||||
| Expr2030485 | |||||||||
| Drives_construct | WBCnstr00004517 | ||||||||
| WBCnstr00012020 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (249) | |||||||||
| Interaction (198) | |||||||||
| Map_info | Map | III | Position | 16.1637 | Error | 0.008846 | |||
| Positive | Positive_clone | Y75B8A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028754 | ||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
