WormBase Tree Display for Gene: WBGene00001722
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WBGene00001722 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F32D1 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | grl-13 | Person_evidence | WBPerson83 | |||||
Sequence_name | F32D1.4 | ||||||||
Molecular_name | F32D1.4a | ||||||||
F32D1.4a.1 | |||||||||
CE34839 | |||||||||
F32D1.4b | |||||||||
CE51624 | |||||||||
F32D1.4b.1 | |||||||||
Other_name | CELE_F32D1.4 | Accession_evidence | NDB | BX284605 | |||||
Public_name | grl-13 | ||||||||
DB_info | Database | AceView | gene | 5E840 | |||||
WormQTL | gene | WBGene00001722 | |||||||
WormFlux | gene | WBGene00001722 | |||||||
NDB | locus_tag | CELE_F32D1.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001722|UniProtKB=O16295 | |||||||
family | PTHR23261 | ||||||||
NCBI | gene | 185200 | |||||||
RefSeq | protein | NM_001330858.4 | |||||||
NM_071800.4 | |||||||||
TrEMBL | UniProtAcc | A0A163VU65 | |||||||
O16295 | |||||||||
UniProt_GCRP | UniProtAcc | O16295 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | grl | ||||||||
Allele (43) | |||||||||
Strain | WBStrain00003413 | ||||||||
WBStrain00033280 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (18) | |||||||||
Paralog (32) | |||||||||
Structured_description | Concise_description | grl-13 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity region, and a C-terminal Ground-like(Grl) domain; GRL-13 is expressed in larval arcade cells; the Grl domainis predicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
WBPaper00006525 | |||||||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
Automated_description | Enriched in AVA; I5 neuron; RIAL; RIAR; and dopaminergic neurons based on tiling array and single-cell RNA-seq studies. Is affected by several genes including clk-1; sek-1; and pgl-1 based on microarray and RNA-seq studies. Is affected by seven chemicals including methylmercuric chloride; Tunicamycin; and Rifampin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F32D1.4a | |||||||
F32D1.4b | |||||||||
Corresponding_CDS_history | F32D1.4:wp105 | ||||||||
Corresponding_transcript | F32D1.4a.1 | ||||||||
F32D1.4b.1 | |||||||||
Associated_feature | WBsf652569 | ||||||||
WBsf999774 | |||||||||
WBsf999775 | |||||||||
Experimental_info | RNAi_result | WBRNAi00014213 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046125 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4453 | ||||||||
Expr5936 | |||||||||
Expr1011259 | |||||||||
Expr1150009 | |||||||||
Expr2012247 | |||||||||
Expr2030483 | |||||||||
Drives_construct | WBCnstr00003880 | ||||||||
WBCnstr00012018 | |||||||||
WBCnstr00036738 | |||||||||
Construct_product | WBCnstr00036738 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (53) | |||||||||
Interaction (18) | |||||||||
Map_info | Map | V | Position | -5.80342 | Error | 0.019564 | |||
Positive | Positive_clone | F32D1 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003717 | ||||||||
WBPaper00028754 | |||||||||
WBPaper00031588 | |||||||||
WBPaper00064105 | |||||||||
Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |