WormBase Tree Display for Gene: WBGene00001716
expand all nodes | collapse all nodes | view schema
| WBGene00001716 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T02E9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-7 | Person_evidence | WBPerson83 | |||||
| Sequence_name | T02E9.2 | ||||||||
| Molecular_name | T02E9.2a | ||||||||
| T02E9.2a.1 | |||||||||
| CE13064 | |||||||||
| T02E9.2b | |||||||||
| CE38539 | |||||||||
| T02E9.2b.1 | |||||||||
| Other_name | CELE_T02E9.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-7 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00001716 | |||||
| WormFlux | gene | WBGene00001716 | |||||||
| NDB | locus_tag | CELE_T02E9.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001716|UniProtKB=O18015 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 179569 | |||||||
| RefSeq | protein | NM_001028923.7 | |||||||
| NM_001028922.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF316573 | |||||||
| TrEMBL | UniProtAcc | Q52GX6 | |||||||
| O18015 | |||||||||
| UniProt_GCRP | UniProtAcc | O18015 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00032683 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031255 | ||||||||
| Ortholog (29) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-7 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity region, and a C-terminal Ground-like(Grl) domain; GRL-7 is expressed in intestine, hypodermis, and seamcells; the Grl domain is predicted to form a cysteine-crosslinkedprotein involved in intercellular signalling, and it has subtlesimilarity to the N-terminal Hedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Located in apical plasma membrane. Expressed in hypodermal cell and ventral cord blast cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T02E9.2a | |||||||
| T02E9.2b | |||||||||
| Corresponding_transcript | T02E9.2a.1 | ||||||||
| T02E9.2b.1 | |||||||||
| Other_sequence | CRC02593_1 | ||||||||
| CR11413 | |||||||||
| PPC06936_1 | |||||||||
| OOC00271_1 | |||||||||
| CR01442 | |||||||||
| Associated_feature | WBsf669378 | ||||||||
| WBsf669379 | |||||||||
| WBsf1001327 | |||||||||
| WBsf1001328 | |||||||||
| WBsf234526 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018027 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035063 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052216 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4447 | ||||||||
| Expr6573 | |||||||||
| Expr15721 | |||||||||
| Expr16250 | |||||||||
| Expr1012644 | |||||||||
| Expr1031027 | |||||||||
| Expr1155848 | |||||||||
| Expr2012272 | |||||||||
| Expr2030508 | |||||||||
| Drives_construct | WBCnstr00003902 | ||||||||
| WBCnstr00012011 | |||||||||
| WBCnstr00036744 | |||||||||
| WBCnstr00042492 | |||||||||
| Construct_product | WBCnstr00036744 | ||||||||
| WBCnstr00042492 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (306) | |||||||||
| Interaction (202) | |||||||||
| Map_info | Map | V | Position | 3.07557 | Error | 0.000511 | |||
| Positive | Positive_clone | T02E9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00047478 | |||||||||
| WBPaper00057376 | |||||||||
| WBPaper00058700 | |||||||||
| WBPaper00061320 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
