WormBase Tree Display for Gene: WBGene00001715
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| WBGene00001715 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K10C2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-6 | Person_evidence | WBPerson83 | |||||
| Sequence_name | K10C2.5 | ||||||||
| Molecular_name | K10C2.5 | ||||||||
| K10C2.5.1 | |||||||||
| CE04751 | |||||||||
| Other_name | CELE_K10C2.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | grl-6 | ||||||||
| DB_info | Database | AceView | gene | XH68 | |||||
| WormQTL | gene | WBGene00001715 | |||||||
| WormFlux | gene | WBGene00001715 | |||||||
| NDB | locus_tag | CELE_K10C2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001715|UniProtKB=Q94273 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 187253 | |||||||
| RefSeq | protein | NM_076683.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315611 | |||||||
| TrEMBL | UniProtAcc | Q94273 | |||||||
| UniProt_GCRP | UniProtAcc | Q94273 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00032691 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (17) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-6 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; GRL-6 is expressed in larval intestine, amphidsocket cells, and neurons; the Grl domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in PVT. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K10C2.5 | |||||||
| Corresponding_transcript | K10C2.5.1 | ||||||||
| Other_sequence | CSC01471_1 | ||||||||
| FD516716.1 | |||||||||
| AS14466 | |||||||||
| FC811116.1 | |||||||||
| MC00143 | |||||||||
| Associated_feature | WBsf654069 | ||||||||
| WBsf670630 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050495 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016961 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034239 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4445 | ||||||||
| Expr6380 | |||||||||
| Expr1019060 | |||||||||
| Expr1154205 | |||||||||
| Expr2012271 | |||||||||
| Expr2030507 | |||||||||
| Drives_construct | WBCnstr00003018 | ||||||||
| WBCnstr00012009 | |||||||||
| WBCnstr00036745 | |||||||||
| Construct_product | WBCnstr00036745 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction | WBInteraction000305397 | ||||||||
| WBInteraction000378475 | |||||||||
| WBInteraction000451390 | |||||||||
| WBInteraction000562802 | |||||||||
| Map_info | Map | X | Position | -2.90361 | Error | 0.002849 | |||
| Positive | Positive_clone | K10C2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00063946 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
