WormBase Tree Display for Gene: WBGene00001713
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WBGene00001713 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F42C5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | grl-4 | Person_evidence | WBPerson83 | |||||
Sequence_name | F42C5.7 | ||||||||
Molecular_name | F42C5.7 | ||||||||
F42C5.7.1 | |||||||||
CE34016 | |||||||||
Other_name | CELE_F42C5.7 | Accession_evidence | NDB | BX284604 | |||||
Public_name | grl-4 | ||||||||
DB_info | Database | AceView | gene | 4I74 | |||||
WormQTL | gene | WBGene00001713 | |||||||
WormFlux | gene | WBGene00001713 | |||||||
NDB | locus_tag | CELE_F42C5.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001713|UniProtKB=Q20327 | |||||||
family | PTHR23261 | ||||||||
NCBI | gene | 3564844 | |||||||
RefSeq | protein | NM_001383117.2 | |||||||
TREEFAM | TREEFAM_ID | TF315611 | |||||||
TrEMBL | UniProtAcc | Q20327 | |||||||
UniProt_GCRP | UniProtAcc | Q20327 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | grl | ||||||||
Allele (23) | |||||||||
Strain | WBStrain00003414 | ||||||||
WBStrain00031801 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (27) | |||||||||
Paralog (32) | |||||||||
Structured_description | Concise_description | grl-4 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; GRL-4 is expressed in pharynx, reproductivesystem, vulva, larval neurons, and larval rectal epithelium; the Grldomain is predicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
WBPaper00006525 | |||||||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
Automated_description | Expressed in anterior arcade cell; head; hypodermis; and vulval cell. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (5) | |||||||||
Experimental_info | RNAi_result | WBRNAi00025479 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00091334 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014818 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025478 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027335 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047089 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032134 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4443 | ||||||||
Expr6040 | |||||||||
Expr1017052 | |||||||||
Expr1031025 | |||||||||
Expr1150954 | |||||||||
Expr2012269 | |||||||||
Expr2030505 | |||||||||
Drives_construct | WBCnstr00003881 | ||||||||
WBCnstr00012007 | |||||||||
WBCnstr00036747 | |||||||||
Construct_product | WBCnstr00036747 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (259) | |||||||||
Interaction | WBInteraction000345284 | ||||||||
WBInteraction000374043 | |||||||||
WBInteraction000519757 | |||||||||
WBInteraction000548041 | |||||||||
WBInteraction000548042 | |||||||||
WBInteraction000563451 | |||||||||
WBInteraction000571609 | |||||||||
Map_info | Map | IV | Position | 3.31855 | Error | 0.000782 | |||
Positive | Positive_clone | F42C5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4912 | |||||||
5640 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003717 | ||||||||
WBPaper00028754 | |||||||||
WBPaper00031588 | |||||||||
WBPaper00064105 | |||||||||
Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |