WormBase Tree Display for Gene: WBGene00001712
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| WBGene00001712 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K03B8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-3 | Person_evidence | WBPerson83 | |||||
| Sequence_name | K03B8.7 | ||||||||
| Molecular_name | K03B8.7 | ||||||||
| K03B8.7.1 | |||||||||
| CE42749 | |||||||||
| Other_name | CELE_K03B8.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-3 | ||||||||
| DB_info | Database | AceView | gene | 5L889 | |||||
| WormQTL | gene | WBGene00001712 | |||||||
| WormFlux | gene | WBGene00001712 | |||||||
| NDB | locus_tag | CELE_K03B8.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001712|UniProtKB=Q21183 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 186928 | |||||||
| RefSeq | protein | NM_073495.3 | |||||||
| TREEFAM | TREEFAM_ID | TF316573 | |||||||
| TrEMBL | UniProtAcc | Q21183 | |||||||
| UniProt_GCRP | UniProtAcc | Q21183 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00002344 | ||||||||
| WBStrain00002345 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (25) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-3 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity region, and a C-terminal Ground-like(Grl) domain; GRL-3 is expressed in intestine, larval renal gland cells,and larval neurons; the Grl domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Enriched in PLM; Z1; Z4; and somatic gonad precursor based on RNA-seq studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by ten chemicals including methylmercuric chloride; Psoralens; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K03B8.7 | |||||||
| Corresponding_CDS_history | K03B8.7:wp192 | ||||||||
| Corresponding_transcript | K03B8.7.1 | ||||||||
| Other_sequence | Oden_isotig23683 | ||||||||
| Associated_feature | WBsf1001345 | ||||||||
| WBsf1020445 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049802 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016524 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4422 | ||||||||
| Expr6313 | |||||||||
| Expr6314 | |||||||||
| Expr1029189 | |||||||||
| Expr1153522 | |||||||||
| Expr2012268 | |||||||||
| Expr2030504 | |||||||||
| Drives_construct | WBCnstr00003013 | ||||||||
| WBCnstr00003014 | |||||||||
| WBCnstr00011984 | |||||||||
| WBCnstr00036748 | |||||||||
| Construct_product | WBCnstr00036748 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (70) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | V | Position | 3.08323 | Error | 0.000362 | |||
| Positive | Positive_clone | K03B8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00029087 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
