WormBase Tree Display for Gene: WBGene00001699
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WBGene00001699 | Evidence | Paper_evidence | WBPaper00003717 | ||||
---|---|---|---|---|---|---|---|
Person_evidence | WBPerson83 | ||||||
SMap | S_parent | Sequence | F09D12 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | grd | ||||||
Allele (20) | |||||||
Strain | WBStrain00002426 | ||||||
WBStrain00002518 | |||||||
WBStrain00002935 | |||||||
WBStrain00032873 | |||||||
WBStrain00032904 | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (17) | |||||||
Paralog (24) | |||||||
Structured_description | Concise_description | grd-10 encodes a hedgehog-like protein, with an N-terminal signalsequence and a C-terminal Ground domain; GRD-10 is expressed in seamcells; the Ground domain is predicted to form a cysteine-crosslinkedprotein involved in intercellular signalling, and it has subtlesimilarity to the N-terminal Hedge domain of HEDGEHOG proteins; GRD-10is weakly required for normal molting; GRD-10 is also required fornormal growth to full size and locomotion; all of these requirements mayreflect common defects in cholesterol-dependent hedgehog-like signallingor in vesicle trafficking. | Paper_evidence | WBPaper00003717 | |||
WBPaper00006525 | |||||||
WBPaper00026841 | |||||||
WBPaper00027263 | |||||||
Curator_confirmed | WBPerson48 | ||||||
WBPerson567 | |||||||
Date_last_updated | 05 Nov 2006 00:00:00 | ||||||
Automated_description | Enriched in several structures, including ABalppppaa; PLM; germ line; non-striated muscle; and somatic nervous system based on Chronogram; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including nicotinic acid; rotenone; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F09D12.1 | |||||
Corresponding_transcript | F09D12.1.1 | ||||||
Other_sequence | JI218756.1 | ||||||
Associated_feature | WBsf645874 | ||||||
WBsf228101 | |||||||
Experimental_info | RNAi_result | WBRNAi00044110 | Inferred_automatically | RNAi_primary | |||
WBRNAi00030704 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076999 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00077023 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012968 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1226 | ||||||
Chronogram1444 | |||||||
Expr4435 | |||||||
Expr5697 | |||||||
Expr1016283 | |||||||
Expr1031014 | |||||||
Expr1148078 | |||||||
Expr2012224 | |||||||
Expr2030460 | |||||||
Drives_construct | WBCnstr00003037 | ||||||
WBCnstr00004510 | |||||||
WBCnstr00011998 | |||||||
WBCnstr00036757 | |||||||
Construct_product | WBCnstr00036757 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (266) | |||||||
Interaction | WBInteraction000309835 | ||||||
WBInteraction000324733 | |||||||
WBInteraction000424863 | |||||||
WBInteraction000553089 | |||||||
WBInteraction000561753 | |||||||
WBInteraction000572731 | |||||||
WBProcess | WBbiopr:00000123 | ||||||
Map_info | Map | IV | Position | -4.03129 | Error | 0.029423 | |
Positive | Positive_clone | F09D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00003717 | ||||||
WBPaper00026841 | |||||||
WBPaper00028754 | |||||||
WBPaper00031588 | |||||||
WBPaper00042648 | |||||||
WBPaper00061786 | |||||||
WBPaper00064105 | |||||||
WBPaper00065085 | |||||||
WBPaper00065833 | |||||||
Remark | grd-10 is paralogous to grd-5 | Paper_evidence | WBPaper00003717 | ||||
grd-3, grd-10, and grd-13 form a cluster, grd-3 and grd-13 are paralogous to the grd-4 and grd-14 cluster | Paper_evidence | WBPaper00003717 | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |