WormBase Tree Display for Gene: WBGene00001645
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| WBGene00001645 | Evidence | Person_evidence | WBPerson2558 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C03E10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-20 | Person_evidence | WBPerson228 | |||||
| Sequence_name | C03E10.4 | ||||||||
| Molecular_name | C03E10.4 | ||||||||
| C03E10.4.1 | |||||||||
| CE26613 | |||||||||
| Other_name | GnT II | Paper_evidence | WBPaper00005572 | ||||||
| CELE_C03E10.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | gly-20 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (46) | |||||||||
| Strain | WBStrain00031654 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | gly-20 encodes an N-acetylglucosaminyltransferase II (GnTII); by homology, GLY-20 is predicted to function in the Golgi to effect protein N-glycosylation; expression of C. elegans GLY-20 and bovine beta1,4-galactosyltransferase I in a baculoviral insect cell system results in efficient glycosylation of mammalian proteins. | Paper_evidence | WBPaper00040952 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 10 Apr 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Involved in protein N-linked glycosylation. Predicted to be located in Golgi membrane. Used to study carbohydrate metabolic disorder. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Is an ortholog of human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:2978 | Homo sapiens | Paper_evidence | WBPaper00064167 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 10 May 2023 00:00:00 | ||||||||
| Potential_model | DOID:0070253 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7045) | |||||
| Models_disease_in_annotation | WBDOannot00000055 | ||||||||
| Molecular_info | Corresponding_CDS | C03E10.4 | |||||||
| Corresponding_CDS_history | C03E10.4:wp31 | ||||||||
| Corresponding_transcript | C03E10.4.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf1001312 | ||||||||
| WBsf232490 | |||||||||
| WBsf232491 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039526 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010055 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028272 | ||||||||
| Expr1030985 | |||||||||
| Expr1143626 | |||||||||
| Expr2012141 | |||||||||
| Expr2030377 | |||||||||
| Drives_construct | WBCnstr00036801 | ||||||||
| Construct_product | WBCnstr00036801 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | V | Position | 3.05492 | Error | 0.002457 | |||
| Positive | Positive_clone | C03E10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4225 | |||||||
| 4365 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
