WormBase Tree Display for Gene: WBGene00001638
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| WBGene00001638 | SMap | S_parent | Sequence | B0416 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-13 | Person_evidence | WBPerson228 | |||||
| Sequence_name | B0416.6 | ||||||||
| Molecular_name | B0416.6 | ||||||||
| B0416.6.1 | |||||||||
| CE26434 | |||||||||
| Other_name | CELE_B0416.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | gly-13 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (65) | |||||||||
| Strain | WBStrain00031584 | ||||||||
| WBStrain00000250 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00001637 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001639 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016402 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates; gly-13 is expressed throughout development in many cell types; a deletion allele of gly-13 is partially lethal with survivors displaying severe morphological and behavioral defects. | Paper_evidence | WBPaper00003352 | |||||
| WBPaper00005672 | |||||||||
| WBPaper00005889 | |||||||||
| WBPaper00005927 | |||||||||
| WBPaper00024538 | |||||||||
| WBPaper00005572 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 10 Apr 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Located in perinuclear region of cytoplasm. Expressed in several structures, including ganglia; intestine; muscle cell; ventral nerve cord; and vulva. Is an ortholog of human MGAT1 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0416.6 | |||||||
| Corresponding_CDS_history | B0416.6:wp115 | ||||||||
| Corresponding_transcript | B0416.6.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf654256 | ||||||||
| WBsf654257 | |||||||||
| WBsf237756 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00065494 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009770 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039049 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065495 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr652 | ||||||||
| Expr653 | |||||||||
| Expr1024537 | |||||||||
| Expr1030984 | |||||||||
| Expr1143211 | |||||||||
| Expr2012135 | |||||||||
| Expr2030371 | |||||||||
| Drives_construct | WBCnstr00012476 | ||||||||
| WBCnstr00036806 | |||||||||
| Construct_product | WBCnstr00036806 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction | WBInteraction000126355 | ||||||||
| WBInteraction000126356 | |||||||||
| WBInteraction000126357 | |||||||||
| WBInteraction000228041 | |||||||||
| WBInteraction000289327 | |||||||||
| WBInteraction000372458 | |||||||||
| WBInteraction000378493 | |||||||||
| WBInteraction000382203 | |||||||||
| WBInteraction000442766 | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| Map_info | Map | X | Position | 0.997171 | Error | 0.021005 | |||
| Positive | Positive_clone | B0416 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4361 | |||||||
| 4378 | |||||||||
| 5438 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
