WormBase Tree Display for Gene: WBGene00001621
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| WBGene00001621 | Evidence | Person_evidence | WBPerson402 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson145 | |||||||||
| SMap | S_parent | Sequence | K08F4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | glt-3 | |||||||
| Sequence_name | K08F4.4 | ||||||||
| Molecular_name | K08F4.4 | ||||||||
| K08F4.4.1 | |||||||||
| CE06152 | |||||||||
| Other_name | CELE_K08F4.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | glt-3 | ||||||||
| DB_info | Database | AceView | gene | 4K897 | |||||
| WormQTL | gene | WBGene00001621 | |||||||
| WormFlux | gene | WBGene00001621 | |||||||
| NDB | locus_tag | CELE_K08F4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001621|UniProtKB=Q21353 | |||||||
| family | PTHR11958 | ||||||||
| NCBI | gene | 177882 | |||||||
| RefSeq | protein | NM_069443.6 | |||||||
| SwissProt | UniProtAcc | Q21353 | |||||||
| UniProt_GCRP | UniProtAcc | Q21353 | |||||||
| OMIM | gene | 600300 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glt | ||||||||
| Allele (40) | |||||||||
| Strain (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00001620 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001624 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001625 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001623 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001622 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | glt-3 encodes an ortholog of glutamate/aspartate and neutral amino acid transporters. | Paper_evidence | WBPaper00004424 | |||||
| WBPaper00013304 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-glutamate transmembrane transporter activity; glutamate:sodium symporter activity; and neutral L-amino acid transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport. Predicted to be located in plasma membrane. Expressed in excretory cell and pharynx. Used to study neurodegenerative disease. Human ortholog(s) of this gene implicated in Huntington's disease; amyotrophic lateral sclerosis; and developmental and epileptic encephalopathy 41. Is an ortholog of human SLC1A2 (solute carrier family 1 member 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1289 | Homo sapiens | Paper_evidence | WBPaper00046048 | ||||
| WBPaper00032397 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson38202 | |||||||||
| Date_last_updated | 23 May 2018 00:00:00 | ||||||||
| Potential_model | DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | |||||
| DOID:12858 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||||
| DOID:0080442 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||||
| Models_disease_in_annotation | WBDOannot00000342 | ||||||||
| Models_disease_asserted | WBDOannot00000528 | ||||||||
| Molecular_info | Corresponding_CDS | K08F4.4 | |||||||
| Corresponding_transcript | K08F4.4.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf646283 | ||||||||
| WBsf228936 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050321 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016829 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034152 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4788 | ||||||||
| Expr1021850 | |||||||||
| Expr1030973 | |||||||||
| Expr1154023 | |||||||||
| Expr2012127 | |||||||||
| Expr2030363 | |||||||||
| Drives_construct | WBCnstr00012245 | ||||||||
| WBCnstr00020300 | |||||||||
| WBCnstr00020301 | |||||||||
| WBCnstr00020302 | |||||||||
| WBCnstr00020996 | |||||||||
| WBCnstr00036818 | |||||||||
| Construct_product | WBCnstr00012245 | ||||||||
| WBCnstr00036818 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | IV | Position | 4.53186 | Error | 0.000965 | |||
| Positive | Positive_clone | K08F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
