WormBase Tree Display for Gene: WBGene00001583
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| WBGene00001583 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | M163 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gfi-3 | Person_evidence | WBPerson1796 | |||||
| Sequence_name | M163.4 | ||||||||
| Molecular_name | M163.4 | ||||||||
| M163.4.1 | |||||||||
| CE12452 | |||||||||
| Other_name | apc-5 | CGC_data_submission | |||||||
| CELE_M163.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | gfi-3 | ||||||||
| DB_info | Database | AceView | gene | XP101 | |||||
| WormQTL | gene | WBGene00001583 | |||||||
| WormFlux | gene | WBGene00001583 | |||||||
| NDB | locus_tag | CELE_M163.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001583|UniProtKB=Q93903 | |||||||
| family | PTHR12830 | ||||||||
| NCBI | gene | 181544 | |||||||
| RefSeq | protein | NM_078008.7 | |||||||
| SwissProt | UniProtAcc | Q93903 | |||||||
| TREEFAM | TREEFAM_ID | TF105444 | |||||||
| UniProt_GCRP | UniProtAcc | Q93903 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gfi | ||||||||
| Allele (90) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086869 | ||||||||
| 00086870 | |||||||||
| 00086871 | |||||||||
| 00086872 | |||||||||
| 00086873 | |||||||||
| 00086874 | |||||||||
| 00086875 | |||||||||
| 00086876 | |||||||||
| 00109034 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00013443 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gfi-3 is also known as apc-5, encoding a distant homolog of the human anaphase promoting complex subunit APC5, but is most closely related to its C. elegans paralog such-1; gfi-3(RNAi) animals are generally unable to progress through meiotic divisions; initially they produce reduced numbers of viable embryos mixed with inviable embryos, but then show severe germline maintenance defects and become sterile. | Paper_evidence | WBPaper00005096 | |||||
| WBPaper00013611 | |||||||||
| WBPaper00037671 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in anaphase-promoting complex-dependent catabolic process; positive regulation of mitotic metaphase/anaphase transition; and protein K11-linked ubiquitination. Predicted to be part of anaphase-promoting complex. Expressed in germ line and sperm. Is an ortholog of human ANAPC5 (anaphase promoting complex subunit 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M163.4 | |||||||
| Corresponding_transcript | M163.4.1 | ||||||||
| Other_sequence | CJC00794_1 | ||||||||
| Associated_feature | WBsf663558 | ||||||||
| WBsf236675 | |||||||||
| WBsf236676 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017227 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050990 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002212 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008231 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9271 | ||||||||
| Expr1016994 | |||||||||
| Expr1030949 | |||||||||
| Expr1154696 | |||||||||
| Expr2012029 | |||||||||
| Expr2030265 | |||||||||
| Drives_construct | WBCnstr00007686 | ||||||||
| WBCnstr00013867 | |||||||||
| WBCnstr00036845 | |||||||||
| Construct_product | WBCnstr00036845 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (151) | |||||||||
| Interaction (61) | |||||||||
| Map_info | Map | X | Position | 16.7086 | |||||
| Positive | Positive_clone | M163 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005096 | ||||||||
| WBPaper00006435 | |||||||||
| WBPaper00037671 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Qadota H, Kaibuchi K] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
