WormBase Tree Display for Gene: WBGene00001492
expand all nodes | collapse all nodes | view schema
| WBGene00001492 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | frm-5.1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y38C1AB.8 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | frm-5 | Person_evidence | WBPerson204 | ||||||
| CELE_Y38C1AB.8 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | frm-5.1 | ||||||||
| DB_info | Database | AceView | gene | 4A786 | |||||
| WormQTL | gene | WBGene00001492 | |||||||
| WormFlux | gene | WBGene00001492 | |||||||
| NDB | locus_tag | CELE_Y38C1AB.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001492|UniProtKB=H8W3Y2 | |||||||
| family | PTHR19964 | ||||||||
| NCBI | gene | 176822 | |||||||
| RefSeq | protein | NM_001268288.4 | |||||||
| NM_001421339.1 | |||||||||
| NM_001421336.1 | |||||||||
| NM_001421337.1 | |||||||||
| NM_001268287.2 | |||||||||
| NM_001421338.1 | |||||||||
| TrEMBL | UniProtAcc | Q33BL4 | |||||||
| A0A8S4QDD1 | |||||||||
| H8W3Y2 | |||||||||
| A0A8S4QCJ3 | |||||||||
| A0A8S4QC08 | |||||||||
| A0A8S4QGP1 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A8S4QDD1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 27 Jan 2010 11:48:23 | WBPerson10213 | Event | Acquires_merge | WBGene00020257 | ||||
| 3 | 07 Feb 2012 16:27:06 | WBPerson2970 | Name_change | CGC_name | frm-5.1 | ||||
| Other_name | frm-5 | ||||||||
| Acquires_merge | WBGene00020257 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | frm | ||||||||
| Allele (113) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023654 | ||||||||
| 00023655 | |||||||||
| Ortholog (56) | |||||||||
| Paralog | WBGene00021406 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003404 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | frm-5.1 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains; by homology, FRM-5.1 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures; the FRM-5.1 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5.1 does not appear to be a phosphatase. | Paper_evidence | WBPaper00005654 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable kinase activity. Predicted to be involved in phosphorylation. Is an ortholog of human FRMPD2 (FERM and PDZ domain containing 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38C1AB.8a | |||||||
| Y38C1AB.8b | |||||||||
| Y38C1AB.8c | |||||||||
| Y38C1AB.8d | |||||||||
| Y38C1AB.8e | |||||||||
| Y38C1AB.8f | |||||||||
| Corresponding_CDS_history | Y38C1AB.8:wp150 | ||||||||
| Y38C1AB.8:wp211 | |||||||||
| Y38C1AB.8a:wp239 | |||||||||
| Corresponding_transcript | Y38C1AB.8a.1 | ||||||||
| Y38C1AB.8b.1 | |||||||||
| Y38C1AB.8c.1 | |||||||||
| Y38C1AB.8d.1 | |||||||||
| Y38C1AB.8e.1 | |||||||||
| Y38C1AB.8f.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055999 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052503 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018048 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020254 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056000 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114830 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018225 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055997 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020256 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010790 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1030893 | ||||||||
| Expr1159517 | |||||||||
| Expr2011887 | |||||||||
| Expr2030125 | |||||||||
| Drives_construct | WBCnstr00037975 | ||||||||
| Construct_product | WBCnstr00037975 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000223319 | ||||||||
| WBInteraction000225867 | |||||||||
| WBInteraction000314590 | |||||||||
| WBInteraction000399254 | |||||||||
| WBInteraction000405211 | |||||||||
| WBInteraction000444442 | |||||||||
| WBInteraction000456983 | |||||||||
| WBInteraction000578362 | |||||||||
| Map_info | Map | IV | Position | -27.2005 | |||||
| Positive | Positive_clone | Y38C1AB | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024261 | ||||||||
| WBPaper00032233 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | data submitted by [Gobel V] | ||||||||
| Sequence connection from [Hodgkin JA], [020814 krb] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
