WormBase Tree Display for Gene: WBGene00001403
expand all nodes | collapse all nodes | view schema
WBGene00001403 | Evidence | Paper_evidence | WBPaper00003411 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_IV | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbl | ||||||
Allele (63) | |||||||
Strain | WBStrain00022622 | ||||||
WBStrain00028706 | |||||||
WBStrain00028707 | |||||||
WBStrain00028708 | |||||||
WBStrain00035944 | |||||||
WBStrain00003953 | |||||||
WBStrain00050790 | |||||||
WBStrain00054900 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (12) | |||||||
Ortholog (44) | |||||||
Structured_description | Concise_description | fbl-1 encodes proteins orthologous to the vertebrate basement membrane protein fibulin; fbl-1 activity is essential for gonad and body morphology, as well as for reproduction; fbl-1 interacts genetically with gon-1 and mig-17, which encode ADAMTS metalloproteases essential for gonad development; the FBL-1C isoform is expressed in anterior and posterior intestinal cells and localizes to the gonad and pharyngeal basement membranes; the FBL-1D isoform is expressed in some head and tail body wall muscle cells. | Paper_evidence | WBPaper00003411 | |||
WBPaper00003910 | |||||||
WBPaper00005654 | |||||||
WBPaper00024609 | |||||||
WBPaper00024610 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 11 Dec 2014 00:00:00 | ||||||
Automated_description | An extracellular matrix structural constituent. Involved in extracellular matrix organization; positive regulation of locomotion; and protein localization. Located in basement membrane. Expressed in ALM; GLR; basal lamina; hyp7 syncytium; and nerve ring. Is an ortholog of human FBLN1 (fibulin 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F56H11.1a | |||||
F56H11.1b | |||||||
F56H11.1c | |||||||
F56H11.1d | |||||||
F56H11.1e | |||||||
F56H11.1f | |||||||
F56H11.1g | |||||||
F56H11.1h | |||||||
Corresponding_CDS_history | F56H11.1:wp39 | ||||||
F56H11.1c:wp141 | |||||||
Corresponding_transcript | F56H11.1a.1 | ||||||
F56H11.1b.1 | |||||||
F56H11.1c.1 | |||||||
F56H11.1d.1 | |||||||
F56H11.1e.1 | |||||||
F56H11.1f.1 | |||||||
F56H11.1g.1 | |||||||
F56H11.1h.1 | |||||||
Other_sequence (29) | |||||||
Associated_feature | WBsf655044 | ||||||
WBsf655045 | |||||||
WBsf997438 | |||||||
WBsf228843 | |||||||
WBsf228844 | |||||||
Experimental_info | RNAi_result (9) | ||||||
Expr_pattern (13) | |||||||
Drives_construct | WBCnstr00003660 | ||||||
WBCnstr00011182 | |||||||
WBCnstr00011223 | |||||||
WBCnstr00011224 | |||||||
WBCnstr00011594 | |||||||
WBCnstr00011920 | |||||||
WBCnstr00036967 | |||||||
Construct_product | WBCnstr00011182 | ||||||
WBCnstr00011224 | |||||||
WBCnstr00011920 | |||||||
WBCnstr00036967 | |||||||
Microarray_results (40) | |||||||
Expression_cluster (205) | |||||||
Interaction (64) | |||||||
Map_info | Map | IV | Position | 4.30419 | Error | 0.002555 | |
Positive | Positive_clone | F56H11 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4280 | |||||
Pseudo_map_position | |||||||
Reference (28) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |