WormBase Tree Display for Gene: WBGene00001403
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| WBGene00001403 | Evidence | Paper_evidence | WBPaper00003411 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | fbl-1 | |||||||
| Sequence_name | F56H11.1 | ||||||||
| Molecular_name (24) | |||||||||
| Other_name | FBLN1 | Accession_evidence | EMBL | AF051401 | |||||
| CELE_F56H11.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | fbl-1 | ||||||||
| DB_info | Database | AceView | gene | 4K309 | |||||
| WormQTL | gene | WBGene00001403 | |||||||
| WormFlux | gene | WBGene00001403 | |||||||
| NDB | locus_tag | CELE_F56H11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001403|UniProtKB=O77469 | |||||||
| family | PTHR24039 | ||||||||
| NCBI | gene | 177788 | |||||||
| RefSeq | protein | NM_001306946.3 | |||||||
| NM_001306950.3 | |||||||||
| NM_001028066.6 | |||||||||
| NM_001306947.3 | |||||||||
| NM_001306948.3 | |||||||||
| NM_001028065.4 | |||||||||
| NM_069293.6 | |||||||||
| NM_001306949.2 | |||||||||
| SwissProt | UniProtAcc | O77469 | |||||||
| TrEMBL | UniProtAcc | A0A061ADQ1 | |||||||
| A0A061AKL1 | |||||||||
| A0A061AIV4 | |||||||||
| A0A061ACF5 | |||||||||
| A0A061ACI3 | |||||||||
| UniProt_GCRP | UniProtAcc | O77469 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbl | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00022622 | ||||||||
| WBStrain00028706 | |||||||||
| WBStrain00028707 | |||||||||
| WBStrain00028708 | |||||||||
| WBStrain00035944 | |||||||||
| WBStrain00003953 | |||||||||
| WBStrain00050790 | |||||||||
| WBStrain00054900 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (44) | |||||||||
| Structured_description | Concise_description | fbl-1 encodes proteins orthologous to the vertebrate basement membrane protein fibulin; fbl-1 activity is essential for gonad and body morphology, as well as for reproduction; fbl-1 interacts genetically with gon-1 and mig-17, which encode ADAMTS metalloproteases essential for gonad development; the FBL-1C isoform is expressed in anterior and posterior intestinal cells and localizes to the gonad and pharyngeal basement membranes; the FBL-1D isoform is expressed in some head and tail body wall muscle cells. | Paper_evidence | WBPaper00003411 | |||||
| WBPaper00003910 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00024609 | |||||||||
| WBPaper00024610 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 11 Dec 2014 00:00:00 | ||||||||
| Automated_description | An extracellular matrix structural constituent. Involved in extracellular matrix organization; positive regulation of locomotion; and protein localization. Located in basement membrane. Expressed in ALM; GLR; basal lamina; hyp7 syncytium; and nerve ring. Is an ortholog of human FBLN1 (fibulin 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56H11.1a | |||||||
| F56H11.1b | |||||||||
| F56H11.1c | |||||||||
| F56H11.1d | |||||||||
| F56H11.1e | |||||||||
| F56H11.1f | |||||||||
| F56H11.1g | |||||||||
| F56H11.1h | |||||||||
| Corresponding_CDS_history | F56H11.1:wp39 | ||||||||
| F56H11.1c:wp141 | |||||||||
| Corresponding_transcript | F56H11.1a.1 | ||||||||
| F56H11.1b.1 | |||||||||
| F56H11.1c.1 | |||||||||
| F56H11.1d.1 | |||||||||
| F56H11.1e.1 | |||||||||
| F56H11.1f.1 | |||||||||
| F56H11.1g.1 | |||||||||
| F56H11.1h.1 | |||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf655044 | ||||||||
| WBsf655045 | |||||||||
| WBsf997438 | |||||||||
| WBsf228843 | |||||||||
| WBsf228844 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062661 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048771 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116170 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027780 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048773 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015848 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110311 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018168 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048772 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00003660 | ||||||||
| WBCnstr00011182 | |||||||||
| WBCnstr00011223 | |||||||||
| WBCnstr00011224 | |||||||||
| WBCnstr00011594 | |||||||||
| WBCnstr00011920 | |||||||||
| WBCnstr00036967 | |||||||||
| Construct_product | WBCnstr00011182 | ||||||||
| WBCnstr00011224 | |||||||||
| WBCnstr00011920 | |||||||||
| WBCnstr00036967 | |||||||||
| Microarray_results (40) | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | IV | Position | 4.30419 | Error | 0.002555 | |||
| Positive | Positive_clone | F56H11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4280 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003411 | ||||||||
| WBPaper00010142 | |||||||||
| WBPaper00024609 | |||||||||
| WBPaper00024610 | |||||||||
| WBPaper00025344 | |||||||||
| WBPaper00026140 | |||||||||
| WBPaper00026601 | |||||||||
| WBPaper00026765 | |||||||||
| WBPaper00027231 | |||||||||
| WBPaper00027713 | |||||||||
| WBPaper00028589 | |||||||||
| WBPaper00028615 | |||||||||
| WBPaper00029033 | |||||||||
| WBPaper00030634 | |||||||||
| WBPaper00030676 | |||||||||
| WBPaper00032451 | |||||||||
| WBPaper00037071 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040382 | |||||||||
| WBPaper00040598 | |||||||||
| WBPaper00041569 | |||||||||
| WBPaper00043346 | |||||||||
| WBPaper00044520 | |||||||||
| WBPaper00045753 | |||||||||
| WBPaper00046103 | |||||||||
| WBPaper00049351 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060691 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
