WormBase Tree Display for Gene: WBGene00001233

WBGene00001233 Evidence: Person_evidence: WBPerson599
  SMap: S_parent: Sequence: T16G1
  Identity: Version: 1
    Name: CGC_name: eif-3.K
      Sequence_name: T16G1.11
      Molecular_name: T16G1.11
        T16G1.11.1
        CE20081
      Other_name: pqn-69 Person_evidence: WBPerson599
        CELE_T16G1.11 Accession_evidence: NDB BX284605
      Public_name: eif-3.K
    DB_info: Database: AceView gene 5N435
        WormQTL gene WBGene00001233
        WormFlux gene WBGene00001233
        NDB locus_tag CELE_T16G1.11
        Panther gene CAEEL|WormBase=WBGene00001233|UniProtKB=Q9XUP3
          family PTHR13022
        NCBI gene 179779
        RefSeq protein NM_073840.8
        SwissProt UniProtAcc Q9XUP3
        TREEFAM TREEFAM_ID TF314893
        UniProt_GCRP UniProtAcc Q9XUP3
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: eif
    Allele (20)
    Strain: WBStrain00035536
      WBStrain00040816
    RNASeq_FPKM (74)
    GO_annotation (24)
    Contained_in_operon: CEOP5376
    Ortholog (37)
    Structured_description: Concise_description: eif-3.k encodes the C. elegans ortholog of eukaryotic translation initiation factor 3 subunit k; by homology, EIF-3.K is predicted to function as part of the eIF3 translation initiation complex; in C. elegans eif-3.k activity is also required cell autonomously for positive regulation of ced-3-mediated apoptosis; EIF-3.K is expressed ubiquitously in embryos and larvae and is localized to the cytoplasm. Paper_evidence: WBPaper00041105
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 17 May 2012 00:00:00
      Automated_description: Predicted to enable RNA binding activity and ribosome binding activity. Predicted to contribute to translation initiation factor activity. Involved in positive regulation of apoptotic process. Located in cytoplasm. Expressed in several structures, including embryonic cell and germ line. Is an ortholog of human EIF3K (eukaryotic translation initiation factor 3 subunit K). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T16G1.11
    Corresponding_transcript: T16G1.11.1
    Other_sequence (79)
    Associated_feature: WBsf232720
  Experimental_info: RNAi_result: WBRNAi00098337 Inferred_automatically: RNAi_primary
      WBRNAi00098340 Inferred_automatically: RNAi_primary
      WBRNAi00098328 Inferred_automatically: RNAi_primary
      WBRNAi00098335 Inferred_automatically: RNAi_primary
      WBRNAi00053411 Inferred_automatically: RNAi_primary
      WBRNAi00098336 Inferred_automatically: RNAi_primary
      WBRNAi00035609 Inferred_automatically: RNAi_primary
      WBRNAi00018767 Inferred_automatically: RNAi_primary
      WBRNAi00098338 Inferred_automatically: RNAi_primary
      WBRNAi00098339 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10039
      Expr13022
      Expr1017123
      Expr1030781
      Expr1156985
      Expr2011261
      Expr2029497
    Drives_construct: WBCnstr00037022
    Construct_product: WBCnstr00037022
    Antibody: WBAntibody00002332
    Microarray_results (22)
    Expression_cluster (128)
    Interaction (204)
  Map_info: Map: V Position: 4.75138 Error: 0.002583
    Positive: Positive_clone: T16G1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4279
        4535
    Pseudo_map_position
  Reference: WBPaper00027281
    WBPaper00028682
    WBPaper00030416
    WBPaper00038491
    WBPaper00041105
    WBPaper00047505
    WBPaper00049828
    WBPaper00050195
    WBPaper00055090
  Remark: The capital letters are used here to distinguish the different eIF3 subunit genes. This roughly agrees with worm gene nomenclature and it makes clear the orthologies for these universal factors (eif-3B corresponding to eIF3b, and so on), in the unified eIF3 nomenclature proposed by Browning KS et al (2001)[JAH][030106 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene