WormBase Tree Display for Gene: WBGene00001092
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| WBGene00001092 | SMap | S_parent | Sequence | F53A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dro-1 | Person_evidence | WBPerson95 | |||||
| Sequence_name | F53A2.5 | ||||||||
| Molecular_name | F53A2.5 | ||||||||
| F53A2.5.1 | |||||||||
| CE16097 | |||||||||
| Other_name | CELE_F53A2.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | dro-1 | ||||||||
| DB_info | Database | AceView | gene | 3O431 | |||||
| WormQTL | gene | WBGene00001092 | |||||||
| WormFlux | gene | WBGene00001092 | |||||||
| NDB | locus_tag | CELE_F53A2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001092|UniProtKB=O45550 | |||||||
| family | PTHR46138 | ||||||||
| NCBI | gene | 191629 | |||||||
| RefSeq | protein | NM_001392227.1 | |||||||
| TREEFAM | TREEFAM_ID | TF317588 | |||||||
| TrEMBL | UniProtAcc | O45550 | |||||||
| UniProt_GCRP | UniProtAcc | O45550 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dro | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00034758 | ||||||||
| 00034759 | |||||||||
| 00034760 | |||||||||
| 00034761 | |||||||||
| 00034762 | |||||||||
| 00108225 | |||||||||
| 00108226 | |||||||||
| 00108227 | |||||||||
| 00108228 | |||||||||
| Contained_in_operon | CEOP3784 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00021132 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be part of negative cofactor 2 complex. Is an ortholog of human DR1 (down-regulator of transcription 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53A2.5 | |||||||
| Corresponding_transcript | F53A2.5.1 | ||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf978513 | ||||||||
| WBsf994860 | |||||||||
| WBsf225990 | |||||||||
| Transcription_factor | WBTranscriptionFactor000617 | ||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1024413 | ||||||||
| Expr1030696 | |||||||||
| Expr1151859 | |||||||||
| Expr2011092 | |||||||||
| Expr2029328 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (120) | |||||||||
| SAGE_tag | SAGE:ttcgtgatatattgttt | Strand | Antisense | ||||||
| SAGE:ttcagaaggcactgcag | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttcagaaggc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttcgtgatat | Strand | Antisense | |||||||
| Interaction (26) | |||||||||
| Map_info | Map | III | Position | 21.211 | Error | 9.1e-05 | |||
| Positive | Positive_clone | F53A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
