WormBase Tree Display for Gene: WBGene00001092

WBGene00001092 SMap: S_parent: Sequence: F53A2
  Identity: Version: 1
    Name: CGC_name: dro-1 Person_evidence: WBPerson95
      Sequence_name: F53A2.5
      Molecular_name: F53A2.5
        F53A2.5.1
        CE16097
      Other_name: CELE_F53A2.5 Accession_evidence: NDB BX284603
      Public_name: dro-1
    DB_info: Database: AceView gene 3O431
        WormQTL gene WBGene00001092
        WormFlux gene WBGene00001092
        NDB locus_tag CELE_F53A2.5
        Panther gene CAEEL|WormBase=WBGene00001092|UniProtKB=O45550
          family PTHR46138
        NCBI gene 191629
        RefSeq protein NM_001392227.1
        TREEFAM TREEFAM_ID TF317588
        TrEMBL UniProtAcc O45550
        UniProt_GCRP UniProtAcc O45550
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dro
    Allele (16)
    RNASeq_FPKM (74)
    GO_annotation: 00034758
      00034759
      00034760
      00034761
      00034762
      00108225
      00108226
      00108227
      00108228
    Contained_in_operon: CEOP3784
    Ortholog: WBGene00061914 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00042430 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00154555 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121204 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00234038 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5267 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1682 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6661 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6727 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3751 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g622 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1526 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1451 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g14402 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g24836 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7899 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01051.g15501 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-dro-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14565 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00766.g15280 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_008368 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01476 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g17422 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30022200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g9325 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239781 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00204841 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259000 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288513 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002805 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0028926 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-061013-797 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      HGNC:3017 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1100515 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1305201 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00021132 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be part of negative cofactor 2 complex. Is an ortholog of human DR1 (down-regulator of transcription 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53A2.5
    Corresponding_transcript: F53A2.5.1
    Other_sequence (33)
    Associated_feature: WBsf978513
      WBsf994860
      WBsf225990
    Transcription_factor: WBTranscriptionFactor000617
  Experimental_info: RNAi_result (16)
    Expr_pattern: Expr1024413
      Expr1030696
      Expr1151859
      Expr2011092
      Expr2029328
    Microarray_results (21)
    Expression_cluster (120)
    SAGE_tag: SAGE:ttcgtgatatattgttt Strand: Antisense
      SAGE:ttcagaaggcactgcag Strand: Sense
        Unambiguously_mapped
      SAGE:ttcagaaggc Strand: Sense
        Unambiguously_mapped
      SAGE:ttcgtgatat Strand: Antisense
    Interaction (26)
  Map_info: Map: III Position: 21.211 Error: 9.1e-05
    Positive: Positive_clone: F53A2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene