WormBase Tree Display for Gene: WBGene00001079
expand all nodes | collapse all nodes | view schema
| WBGene00001079 | SMap | S_parent | Sequence | T22B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-20 | Person_evidence | WBPerson261 | |||||
| Sequence_name | T22B3.1 | ||||||||
| Molecular_name | T22B3.1 | ||||||||
| T22B3.1.1 | |||||||||
| CE40520 | |||||||||
| Other_name | CELE_T22B3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dpy-20 | ||||||||
| DB_info | Database | AceView | gene | 4M462 | |||||
| WormQTL | gene | WBGene00001079 | |||||||
| WormFlux | gene | WBGene00001079 | |||||||
| NDB | locus_tag | CELE_T22B3.1 | |||||||
| NCBI | gene | 178105 | |||||||
| RefSeq | protein | NM_069814.6 | |||||||
| SwissProt | UniProtAcc | P34807 | |||||||
| TREEFAM | TREEFAM_ID | TF320341 | |||||||
| UniProt_GCRP | UniProtAcc | P34807 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00143888 | ||||||||
| Allele | WBVar00144486 | Inferred_automatically | From strain object: CB3775 | ||||||
| From strain object: CB3874 | |||||||||
| From strain object: CB3875 | |||||||||
| From strain object: CB3908 | |||||||||
| From strain object: CB3909 | |||||||||
| From strain object: CB4227 | |||||||||
| From strain object: CB4435 | |||||||||
| From strain object: CB4747 | |||||||||
| From strain object: ET263 | |||||||||
| From strain object: JR2750 | |||||||||
| WBVar00143942 | Inferred_automatically (27) | ||||||||
| WBVar00143943 | Inferred_automatically | From strain object: NL2808 | |||||||
| WBVar00054222 | Inferred_automatically | From strain object: TN142 | |||||||
| WBVar00054242 | Inferred_automatically | From strain object: TN322 | |||||||
| WBVar00054247 | Inferred_automatically | From strain object: TN326 | |||||||
| WBVar00143026 | |||||||||
| WBVar01473741 | |||||||||
| WBVar00144843 | |||||||||
| WBVar00143890 | |||||||||
| WBVar00242215 | |||||||||
| WBVar00143990 | |||||||||
| WBVar01473739 | |||||||||
| WBVar00242192 | |||||||||
| WBVar00143902 | |||||||||
| WBVar00242213 | |||||||||
| WBVar00143996 | |||||||||
| WBVar00143850 | |||||||||
| WBVar01473740 | |||||||||
| WBVar00242239 | |||||||||
| WBVar01500079 | |||||||||
| WBVar01825792 | |||||||||
| WBVar01688203 | |||||||||
| WBVar02151254 | |||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar00317283 | |||||||||
| WBVar00436452 | |||||||||
| WBVar02143879 | |||||||||
| WBVar00436453 | |||||||||
| WBVar00436454 | |||||||||
| WBVar00436455 | |||||||||
| WBVar00944475 | |||||||||
| WBVar00297514 | |||||||||
| WBVar00944476 | |||||||||
| WBVar00944477 | |||||||||
| WBVar00944478 | |||||||||
| WBVar00143888 | |||||||||
| WBVar00944479 | |||||||||
| WBVar00944480 | |||||||||
| WBVar00256974 | |||||||||
| WBVar00944481 | |||||||||
| WBVar00944482 | |||||||||
| WBVar00944483 | |||||||||
| WBVar00944484 | |||||||||
| WBVar00944485 | |||||||||
| WBVar00944486 | |||||||||
| WBVar00944487 | |||||||||
| WBVar00944488 | |||||||||
| WBVar00944489 | |||||||||
| WBVar00944490 | |||||||||
| WBVar00944491 | |||||||||
| WBVar00944492 | |||||||||
| WBVar00944493 | |||||||||
| WBVar00192153 | |||||||||
| WBVar00944494 | |||||||||
| WBVar02079103 | |||||||||
| WBVar02134729 | |||||||||
| WBVar01731190 | |||||||||
| WBVar01429592 | |||||||||
| WBVar02059084 | |||||||||
| WBVar01967043 | |||||||||
| WBVar01967044 | |||||||||
| WBVar01967045 | |||||||||
| WBVar01967046 | |||||||||
| WBVar02008311 | |||||||||
| WBVar02008312 | |||||||||
| WBVar01500245 | |||||||||
| Legacy_information | e1282ts : medium dumpy (20x) weak dumpy (15x) strong dumpy round- nosed (25x). ES3 (25x all stages). ME2 (20x). NA4 (other alleles all strong dumpy (20x) almost inviable (15x) : e1362 e1415 e2017amber). | ||||||||
| See also e1362, e1415, e1422, e2017, e2480, s1711, s1774, s1776, s2033 | |||||||||
| [C.elegansII] e1282ts : medium dumpy (20C), weak dumpy (15C), strong dumpy, round-nosed (25C). TSPduring L1 and L2 stages. ES3 (25C all stages). ME2 (20C). OA>10: other alleles mostly severe round-headed dumpy (20C), inviable or almost inviable (15C), e1362,e1415, cn142 (strongest allele), e2017amb (slightly weaker), cn322, etc. m474::Tc1 : strong dumpy, reverts to Dpy (m474s2033)or wild type (m474m495). Cloned: rare 1.9 kb RNA, most abundant in L2; encodes predicted 359aa novel protein. [Hosono et al. 1982; Clark et al. 1995; BC] | |||||||||
| Strain (177) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00044559 | ||||||||
| 00044560 | |||||||||
| 00044561 | |||||||||
| 00044562 | |||||||||
| 00108206 | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Concise_description | dpy-20 encodes a BED zinc finger protein, with no known homologs outside of nematodes, that is required for normal body morphology. | Paper_evidence | WBPaper00000609 | |||||
| WBPaper00002182 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables sequence-specific double-stranded DNA binding activity. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T22B3.1 | |||||||
| Corresponding_CDS_history | T22B3.1:wp166 | ||||||||
| Corresponding_transcript | T22B3.1.1 | ||||||||
| Other_sequence | EY467652.1 | ||||||||
| ACC10421_1 | |||||||||
| Dviv_isotig16525 | |||||||||
| Dviv_isotig16524 | |||||||||
| Acan_isotig18415 | |||||||||
| Associated_feature | WBsf668360 | ||||||||
| WBsf997910 | |||||||||
| WBsf997911 | |||||||||
| WBsf997912 | |||||||||
| WBsf1018244 | |||||||||
| WBsf1018245 | |||||||||
| WBsf1018246 | |||||||||
| Transcription_factor | WBTranscriptionFactor000478 | ||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr1012656 | ||||||||
| Expr1157340 | |||||||||
| Expr2011063 | |||||||||
| Expr2029300 | |||||||||
| Drives_construct | WBCnstr00006715 | ||||||||
| WBCnstr00006803 | |||||||||
| WBCnstr00019441 | |||||||||
| WBCnstr00037093 | |||||||||
| Construct_product | WBCnstr00006715 | ||||||||
| WBCnstr00006803 | |||||||||
| WBCnstr00007882 | |||||||||
| WBCnstr00019441 | |||||||||
| WBCnstr00037093 | |||||||||
| Microarray_results | SMD_T22B3.1 | ||||||||
| SMD_ZK792.7 | |||||||||
| 191799_at | |||||||||
| A_12_P105231 | |||||||||
| Aff_T22B3.1 | |||||||||
| GPL13394_WBGene00001079 | |||||||||
| GPL13914_T22B3.1 | |||||||||
| GPL14144_T22B3.1_1079-1138_0.945_2_A | |||||||||
| GPL14144_T22B3.1_1181-1240_0.909_12_B | |||||||||
| GPL14144_T22B3.1_427-486_0.895_17_C | |||||||||
| GPL19516_CGZ0012372 | |||||||||
| GPL19516_CGZ0036014 | |||||||||
| GPL21109_Cat_T22B3.1 | |||||||||
| GPL21109_T22B3.1 | |||||||||
| GPL3518_CE03694 | |||||||||
| GPL8304_CE_WBGene00001079_A | |||||||||
| GPL8673_T22B3_1P00342 | |||||||||
| GPL8673_T22B3_1P00450 | |||||||||
| GPL8673_T22B3_1P00779 | |||||||||
| GPL9450_T22B3.1 | |||||||||
| cea2.p.98986 | |||||||||
| Expression_cluster (184) | |||||||||
| Interaction (39) | |||||||||
| Map_info | Map | IV | Position | 5.21542 | Error | 0.003855 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | nDf27 | |||||||
| sDf8 | |||||||||
| Positive_clone | BC#L302 | ||||||||
| T22B3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Negative | Outside_rearr | nDf28 | |||||||
| mDp4 | |||||||||
| Mapping_data | 2_point (21) | ||||||||
| Multi_point (169) | |||||||||
| Pos_neg_data (28) | |||||||||
| Landmark_gene | |||||||||
| Reference (108) | |||||||||
| Method | Gene |
