WormBase Tree Display for Gene: WBGene00001065
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| WBGene00001065 | SMap | S_parent | Sequence | EGAP7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-3 | Person_evidence | WBPerson261 | |||||
| Sequence_name | EGAP7.1 | ||||||||
| Molecular_name | EGAP7.1 | ||||||||
| EGAP7.1.1 | |||||||||
| CE07013 | |||||||||
| Other_name | dpy-12 | ||||||||
| CELE_EGAP7.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | dpy-3 | ||||||||
| DB_info | Database | AceView | gene | XC764 | |||||
| WormQTL | gene | WBGene00001065 | |||||||
| WormFlux | gene | WBGene00001065 | |||||||
| NDB | locus_tag | CELE_EGAP7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001065|UniProtKB=Q19079 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 180529 | |||||||
| RefSeq | protein | NM_075994.7 | |||||||
| TrEMBL | UniProtAcc | Q19079 | |||||||
| UniProt_GCRP | UniProtAcc | Q19079 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00142921 | ||||||||
| Allele (27) | |||||||||
| Legacy_information | e27 : medium dumpy (non-roller). L1 non-dumpy. ES3 (all stages) ME1. NA > 10 (e2079 sc26 : left roller dumpy m39ts etc.). | ||||||||
| e182 : medium dumpy. ES3 (adult). ME1. NA1. | |||||||||
| [C.elegansII] e27 : medium dumpy (non-roller). L1 non-dumpy. Suppresses some alleles of glp-1, emb-5.ES3 (all stages) ME1. OA>10 : e2079, sc26 (left roller dumpy), e182 (pka dpy-12, medium dumpy, ES3 (adult), ME1), m39ts [Brenner 1974; EL] | |||||||||
| Strain (17) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063404 | ||||||||
| 00063405 | |||||||||
| 00063406 | |||||||||
| 00063407 | |||||||||
| 00063408 | |||||||||
| 00063409 | |||||||||
| 00108189 | |||||||||
| Ortholog (34) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Used to study skin disease. Is an ortholog of human C1QTNF9 (C1q and TNF related 9); C1QTNF9B (C1q and TNF related 9B); and OTOL1 (otolin 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:37 | Homo sapiens | Paper_evidence | WBPaper00061220 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 02 May 2022 00:00:00 | ||||||||
| Models_disease_in_annotation | WBDOannot00001174 | ||||||||
| Molecular_info | Corresponding_CDS | EGAP7.1 | |||||||
| Corresponding_transcript | EGAP7.1.1 | ||||||||
| Other_sequence (114) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Chronogram1645 | ||||||||
| Expr1012140 | |||||||||
| Expr1030674 | |||||||||
| Expr1147697 | |||||||||
| Expr2011073 | |||||||||
| Expr2029310 | |||||||||
| Drives_construct | WBCnstr00037106 | ||||||||
| Construct_product | WBCnstr00037106 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (278) | |||||||||
| Interaction (176) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | X | Position | -17.0217 | Error | 0.010146 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mnDp52 | |||||||
| yDp14 | |||||||||
| yDp16 | |||||||||
| meDf6 | |||||||||
| Positive_clone | EGAP7 | Person_evidence | WBPerson297 | ||||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Negative | Outside_rearr | mnDp69 | |||||||
| Mapping_data | 2_point (25) | ||||||||
| Multi_point (51) | |||||||||
| Pos_neg_data (32) | |||||||||
| Landmark_gene | |||||||||
| Reference | WBPaper00000031 | ||||||||
| WBPaper00000465 | |||||||||
| WBPaper00000608 | |||||||||
| WBPaper00001134 | |||||||||
| WBPaper00001153 | |||||||||
| WBPaper00001235 | |||||||||
| WBPaper00001309 | |||||||||
| WBPaper00001328 | |||||||||
| WBPaper00001439 | |||||||||
| WBPaper00001490 | |||||||||
| WBPaper00001558 | |||||||||
| WBPaper00001563 | |||||||||
| WBPaper00001706 | |||||||||
| WBPaper00001709 | |||||||||
| WBPaper00001722 | |||||||||
| WBPaper00001736 | |||||||||
| WBPaper00001747 | |||||||||
| WBPaper00001814 | |||||||||
| WBPaper00001852 | |||||||||
| WBPaper00002887 | |||||||||
| WBPaper00003197 | |||||||||
| WBPaper00003372 | |||||||||
| WBPaper00005704 | |||||||||
| WBPaper00005747 | |||||||||
| WBPaper00005815 | |||||||||
| WBPaper00006103 | |||||||||
| WBPaper00006361 | |||||||||
| WBPaper00013454 | |||||||||
| WBPaper00014149 | |||||||||
| WBPaper00014218 | |||||||||
| WBPaper00014383 | |||||||||
| WBPaper00014443 | |||||||||
| WBPaper00014761 | |||||||||
| WBPaper00014772 | |||||||||
| WBPaper00014842 | |||||||||
| WBPaper00014959 | |||||||||
| WBPaper00015407 | |||||||||
| WBPaper00015485 | |||||||||
| WBPaper00016000 | |||||||||
| WBPaper00016102 | |||||||||
| WBPaper00016190 | |||||||||
| WBPaper00016388 | |||||||||
| WBPaper00016498 | |||||||||
| WBPaper00016554 | |||||||||
| WBPaper00017213 | |||||||||
| WBPaper00017218 | |||||||||
| WBPaper00017219 | |||||||||
| WBPaper00017284 | |||||||||
| WBPaper00021083 | |||||||||
| WBPaper00022084 | |||||||||
| WBPaper00022116 | |||||||||
| WBPaper00022427 | |||||||||
| WBPaper00022767 | |||||||||
| WBPaper00022821 | |||||||||
| WBPaper00023755 | |||||||||
| WBPaper00027261 | |||||||||
| WBPaper00027822 | |||||||||
| WBPaper00029020 | |||||||||
| WBPaper00030871 | |||||||||
| WBPaper00030897 | |||||||||
| WBPaper00032033 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040146 | |||||||||
| WBPaper00047190 | |||||||||
| WBPaper00053771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057161 | |||||||||
| WBPaper00061220 | |||||||||
| WBPaper00062715 | |||||||||
| WBPaper00064435 | |||||||||
| WBPaper00065103 | |||||||||
| WBPaper00065859 | |||||||||
| Remark | Sequence connection from [Johnstone IL], [020809 krb] | ||||||||
| Method | Gene |
