WormBase Tree Display for Gene: WBGene00000889
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| WBGene00000889 | SMap | S_parent | Sequence | Y116A8C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-13 | Person_evidence | WBPerson466 | |||||
| Sequence_name | Y116A8C.34 | ||||||||
| Molecular_name | Y116A8C.34a | ||||||||
| Y116A8C.34a.1 | |||||||||
| CE24152 | |||||||||
| Y116A8C.34b | |||||||||
| CE23338 | |||||||||
| Y116A8C.34b.1 | |||||||||
| Other_name | cyp-13 | Person_evidence | WBPerson466 | ||||||
| CELE_Y116A8C.34 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | cyn-13 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-13 -> cyn-13 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (118) | |||||||||
| Legacy_information | [Page AP] Y116A8C.34 No mutants known. Transspliced to SL1 and SL2 (Zorio & Blumenthal (1999) = cgc3463 ) | ||||||||
| Strain | WBStrain00037909 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP4596 | ||||||||
| Ortholog (36) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-13 encodes a predicted cyclophilin that can function as a nuclease in vitro; functions to regulate DNA degradation and cell death in a genetic pathway with wah-1, cps-6, crn-1, crn-4, crn-5 and these proteins are believed to form a complex in vivo. | Paper_evidence | WBPaper00003463 | |||||
| WBPaper00005857 | |||||||||
| WBPaper00026884 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Enables nuclease activity. Involved in apoptotic DNA fragmentation. Predicted to be located in cytoplasm and intracellular membrane-bounded organelle. Is an ortholog of human PPIE (peptidylprolyl isomerase E). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y116A8C.34a | |||||||
| Y116A8C.34b | |||||||||
| Corresponding_transcript | Y116A8C.34a.1 | ||||||||
| Y116A8C.34b.1 | |||||||||
| Other_sequence (82) | |||||||||
| Associated_feature | WBsf998974 | ||||||||
| WBsf1018948 | |||||||||
| WBsf231286 | |||||||||
| WBsf231287 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr1026785 | ||||||||
| Expr1030554 | |||||||||
| Expr1158963 | |||||||||
| Expr2010665 | |||||||||
| Expr2028905 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (55) | |||||||||
| WBProcess | WBbiopr:00000014 | ||||||||
| WBbiopr:00000103 | |||||||||
| Map_info | Map | IV | Position | 16.1724 | Error | 0.006383 | |||
| Positive | Positive_clone | Y116A8C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003463 | ||||||||
| WBPaper00003817 | |||||||||
| WBPaper00005857 | |||||||||
| WBPaper00006283 | |||||||||
| WBPaper00018177 | |||||||||
| WBPaper00019408 | |||||||||
| WBPaper00026884 | |||||||||
| WBPaper00027291 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | This gene has been renamed with approval of the CGC (cyp-13->cyn-13) | Person_evidence | WBPerson466 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
