WormBase Tree Display for Gene: WBGene00000885
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| WBGene00000885 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-9 | Person_evidence | WBPerson466 | |||||
| Sequence_name | T27D1.1 | ||||||||
| Molecular_name | T27D1.1 | ||||||||
| T27D1.1.1 | |||||||||
| CE03745 | |||||||||
| Other_name | cyp-9 | Person_evidence | WBPerson466 | ||||||
| CELE_T27D1.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | cyn-9 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-9 -> cyn-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (34) | |||||||||
| Legacy_information | [C.elegansII] NMK. Cyclophilin family (diverged CsA-binding domain), transspliced to SL2. Cosmid C14B1. [TP] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP3132 | ||||||||
| Ortholog (30) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-9 encodes a peptidyl prolyl cis-trans isomerase most similar to human cyclophilin G (OMIM:606093); CYN-9 likely functions as a catalyst in the folding and modification of cuticle collagens; a cyn-9::lacZ reporter is expressed in the syncytial hypodermis from early larval through adult stages; cyn-9 mRNA is expressed most strongly at the mid-L3 and mid-L4 larval stages, the intermoult period when collagens are synthesized. | Paper_evidence | WBPaper00002957 | |||||
| WBPaper00003853 | |||||||||
| WBPaper00026884 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm. Expressed in hypodermis. Is an ortholog of human NKTR (natural killer cell triggering receptor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27D1.1 | |||||||
| Corresponding_transcript | T27D1.1.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf666673 | ||||||||
| WBsf666674 | |||||||||
| WBsf991872 | |||||||||
| WBsf226379 | |||||||||
| WBsf226380 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062388 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019326 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027732 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103548 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076718 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054304 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006086 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061896 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1488 | ||||||||
| Expr1011001 | |||||||||
| Expr1030550 | |||||||||
| Expr1157848 | |||||||||
| Expr2010677 | |||||||||
| Expr2028917 | |||||||||
| Drives_construct | WBCnstr00037221 | ||||||||
| Construct_product | WBCnstr00037221 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (120) | |||||||||
| Interaction (47) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | III | Position | -4.71457 | Error | 0.046668 | |||
| Positive | Positive_clone | C14B1 | Author_evidence | Page AM | |||||
| T27D1 | Author_evidence | Page AM | |||||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002472 | ||||||||
| WBPaper00002957 | |||||||||
| WBPaper00003853 | |||||||||
| WBPaper00011351 | |||||||||
| WBPaper00011822 | |||||||||
| WBPaper00026884 | |||||||||
| WBPaper00032108 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Cyclophilin family (diverged CsA-binding domain). | ||||||||
| [Page AM] Identified by the sequencing project. cyclophilin-like homology by Blast analysis. cDNA clone isolated. This gene is transpliced by SL-2. | |||||||||
| PPIase or cyclophilin, EC 5.2.1.8 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| This gene has been renamed with approval of the CGC (cyp-9->cyn-9) | Person_evidence | WBPerson466 | |||||||
| Method | Gene |
