WormBase Tree Display for Gene: WBGene00000882
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WBGene00000882 | SMap | S_parent | Sequence | F42G9 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cyn | ||||||
Allele (14) | |||||||
Legacy_information | [C.elegansII] NMK. Cyclophilin family. Signal peptide. Cosmid C51B6. [TP] | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Ortholog (35) | |||||||
Paralog (18) | |||||||
Structured_description | Concise_description | cyn-6 encodes a cyclophilin most similar to human secreted cyclophilin type B isoforms that is functional when expressed in E. coli; it is expressed in the intestine. | Paper_evidence | WBPaper00002472 | |||
WBPaper00005482 | |||||||
WBPaper00026884 | |||||||
Curator_confirmed | WBPerson48 | ||||||
WBPerson1843 | |||||||
Date_last_updated | 20 Mar 2007 00:00:00 | ||||||
Automated_description | Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm and intracellular membrane-bounded organelle. Expressed in intestine. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 9. Is an ortholog of human PPIB (peptidylprolyl isomerase B). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0110349 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9255) | ||
Molecular_info | Corresponding_CDS | F42G9.2 | |||||
Corresponding_transcript | F42G9.2.1 | ||||||
Other_sequence (76) | |||||||
Associated_feature | WBsf654939 | ||||||
WBsf658581 | |||||||
Experimental_info | RNAi_result | WBRNAi00076416 | Inferred_automatically | RNAi_primary | |||
WBRNAi00027816 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014849 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006569 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047133 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022707 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090595 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022708 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1991 | ||||||
Expr1024208 | |||||||
Expr1030547 | |||||||
Expr1151001 | |||||||
Expr2010674 | |||||||
Expr2028914 | |||||||
Drives_construct | WBCnstr00010563 | ||||||
WBCnstr00037224 | |||||||
Construct_product | WBCnstr00010563 | ||||||
WBCnstr00037224 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (222) | |||||||
SAGE_tag (15) | |||||||
Interaction (142) | |||||||
Map_info | Map | III | Position | -26.1239 | Error | 0.022372 | |
Positive | Positive_clone | C51B6 | Author_evidence | Page AM | |||
F42G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00002472 | ||||||
WBPaper00005482 | |||||||
WBPaper00015191 | |||||||
WBPaper00024704 | |||||||
WBPaper00026884 | |||||||
WBPaper00033090 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00065331 | |||||||
Remark | signal_peptide | ||||||
[Page AM] Initially identified by the sequencing project. Referred to as cypB homolog by Blast analysis. cDNA clone isolated | |||||||
PPIase or cyclophilin, EC 5.2.1.8 | |||||||
This gene has been renamed with approval of the CGC (cyp-6->cyn-6) | Person_evidence | WBPerson466 | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |