WormBase Tree Display for Gene: WBGene00000882
expand all nodes | collapse all nodes | view schema
WBGene00000882 | SMap | S_parent | Sequence | F42G9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cyn-6 | Person_evidence | WBPerson466 | |||||
Sequence_name | F42G9.2 | ||||||||
Molecular_name | F42G9.2 | ||||||||
F42G9.2.1 | |||||||||
CE01301 | |||||||||
Other_name | cyp-6 | Person_evidence | WBPerson466 | ||||||
CELE_F42G9.2 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | cyn-6 | ||||||||
DB_info | Database | AceView | gene | 3B391 | |||||
WormQTL | gene | WBGene00000882 | |||||||
WormFlux | gene | WBGene00000882 | |||||||
NDB | locus_tag | CELE_F42G9.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000882|UniProtKB=P52014 | |||||||
family | PTHR11071 | ||||||||
NCBI | gene | 175231 | |||||||
RefSeq | protein | NM_064856.7 | |||||||
KEGG | KEGG_id | 5.2.1.8 | |||||||
NemaPath | KEGG_id | 5.2.1.8 | |||||||
SwissProt | UniProtAcc | P52014 | |||||||
TREEFAM | TREEFAM_ID | TF354259 | |||||||
UniProt_GCRP | UniProtAcc | P52014 | |||||||
OMIM | gene | 123841 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-6 -> cyn-6 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cyn | ||||||||
Allele (14) | |||||||||
Legacy_information | [C.elegansII] NMK. Cyclophilin family. Signal peptide. Cosmid C51B6. [TP] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Ortholog (35) | |||||||||
Paralog (18) | |||||||||
Structured_description | Concise_description | cyn-6 encodes a cyclophilin most similar to human secreted cyclophilin type B isoforms that is functional when expressed in E. coli; it is expressed in the intestine. | Paper_evidence | WBPaper00002472 | |||||
WBPaper00005482 | |||||||||
WBPaper00026884 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm and intracellular membrane-bounded organelle. Expressed in intestine. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 9. Is an ortholog of human PPIB (peptidylprolyl isomerase B). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0110349 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9255) | ||||
Molecular_info | Corresponding_CDS | F42G9.2 | |||||||
Corresponding_transcript | F42G9.2.1 | ||||||||
Other_sequence | PT04104 | ||||||||
AS01562 | |||||||||
RS06060 | |||||||||
Acan_isotig17815 | |||||||||
FE920113.1 | |||||||||
XI03787 | |||||||||
CR00527 | |||||||||
NB07237 | |||||||||
Tcol_isotig12750 | |||||||||
HS01081 | |||||||||
MHC08498_1 | |||||||||
TVC00084_1 | |||||||||
XI00567 | |||||||||
MI01232 | |||||||||
Dviv_isotig10701 | |||||||||
GPC03225_1 | |||||||||
BU586459.1 | |||||||||
CN477818.1 | |||||||||
XI04046 | |||||||||
MHC03950_1 | |||||||||
ES740797.1 | |||||||||
GR979168.1 | |||||||||
MCC00825_1 | |||||||||
TV00358 | |||||||||
Acan_isotig06375 | |||||||||
GRC03112_1 | |||||||||
MC00225 | |||||||||
CJC02284_1 | |||||||||
CRC01947_1 | |||||||||
GO252584.1 | |||||||||
OOC02049_1 | |||||||||
MH02081 | |||||||||
MH02914 | |||||||||
EX537831.1 | |||||||||
PTC03567_1 | |||||||||
MPC01511_1 | |||||||||
NBC02918_1 | |||||||||
TVC01248_1 | |||||||||
TSC01680_1 | |||||||||
ALC00189_1 | |||||||||
GR367818.1 | |||||||||
RS08408 | |||||||||
GR11913 | |||||||||
HC03877 | |||||||||
JK315029.1 | |||||||||
EX544231.1 | |||||||||
MH01061 | |||||||||
Dviv_isotig10700 | |||||||||
Dviv_isotig10699 | |||||||||
TMC01104_1 | |||||||||
TS00144 | |||||||||
RSC01443_1 | |||||||||
TS02400 | |||||||||
RS07233 | |||||||||
Acan_isotig06374 | |||||||||
HSC00971_1 | |||||||||
MPC01526_1 | |||||||||
XIC01537_1 | |||||||||
BM277183.1 | |||||||||
RS06078 | |||||||||
RSC00704_1 | |||||||||
TV01443 | |||||||||
GPC02930_1 | |||||||||
BG577520.1 | |||||||||
MA03346 | |||||||||
MHC09263_1 | |||||||||
BXC05532_1 | |||||||||
MHC02607_1 | |||||||||
SC00124 | |||||||||
MH10391 | |||||||||
TS03183 | |||||||||
CN477827.1 | |||||||||
GP00336 | |||||||||
GR978899.1 | |||||||||
BE239171.1 | |||||||||
TMC00570_1 | |||||||||
Associated_feature | WBsf654939 | ||||||||
WBsf658581 | |||||||||
Experimental_info | RNAi_result | WBRNAi00076416 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027816 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014849 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006569 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047133 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022707 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090595 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022708 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1991 | ||||||||
Expr1024208 | |||||||||
Expr1030547 | |||||||||
Expr1151001 | |||||||||
Expr2010674 | |||||||||
Expr2028914 | |||||||||
Drives_construct | WBCnstr00010563 | ||||||||
WBCnstr00037224 | |||||||||
Construct_product | WBCnstr00010563 | ||||||||
WBCnstr00037224 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (222) | |||||||||
SAGE_tag (15) | |||||||||
Interaction (142) | |||||||||
Map_info | Map | III | Position | -26.1239 | Error | 0.022372 | |||
Positive | Positive_clone | C51B6 | Author_evidence | Page AM | |||||
F42G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00002472 | ||||||||
WBPaper00005482 | |||||||||
WBPaper00015191 | |||||||||
WBPaper00024704 | |||||||||
WBPaper00026884 | |||||||||
WBPaper00033090 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065331 | |||||||||
Remark | signal_peptide | ||||||||
[Page AM] Initially identified by the sequencing project. Referred to as cypB homolog by Blast analysis. cDNA clone isolated | |||||||||
PPIase or cyclophilin, EC 5.2.1.8 | |||||||||
This gene has been renamed with approval of the CGC (cyp-6->cyn-6) | Person_evidence | WBPerson466 | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |