WormBase Tree Display for Gene: WBGene00000800
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| WBGene00000800 | SMap | S_parent | Sequence | Y23H5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cars-1 | Person_evidence | WBPerson36 | |||||
| WBPerson10953 | |||||||||
| Sequence_name | Y23H5A.7 | ||||||||
| Molecular_name | Y23H5A.7b | ||||||||
| Y23H5A.7b.1 | |||||||||
| CE54491 | |||||||||
| Y23H5A.7c | |||||||||
| CE49746 | |||||||||
| Y23H5A.7c.1 | |||||||||
| Other_name | crs-1 | ||||||||
| CELE_Y23H5A.7 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | cars-1 | ||||||||
| DB_info | Database | AceView | gene | 1D192 | |||||
| WormQTL | gene | WBGene00000800 | |||||||
| WormFlux | gene | WBGene00000800 | |||||||
| NDB | locus_tag | CELE_Y23H5A.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000800|UniProtKB=O76618 | |||||||
| family | PTHR10890 | ||||||||
| NCBI | gene | 171821 | |||||||
| RefSeq | protein | NM_001306359.3 | |||||||
| NM_058613.7 | |||||||||
| KEGG | KEGG_id | 6.1.1.16 | |||||||
| NemaPath | KEGG_id | 6.1.1.16 | |||||||
| TrEMBL | UniProtAcc | A0A061ACL3 | |||||||
| A0A8S4QD27 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 29 Jan 2010 14:16:16 | WBPerson2970 | Name_change | CGC_name | cars-1 | ||||
| Other_name | crs-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cars | ||||||||
| Allele (97) | |||||||||
| Strain | WBStrain00036845 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000801 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| Structured_description | Concise_description | cars-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis; CARS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00004424 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Nov 2015 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Predicted to be involved in cysteinyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Is an ortholog of human CARS1 (cysteinyl-tRNA synthetase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y23H5A.7b | |||||||
| Y23H5A.7c | |||||||||
| Corresponding_CDS_history | Y23H5A.7a:wp282 | ||||||||
| Y23H5A.7b:wp282 | |||||||||
| Corresponding_transcript | Y23H5A.7b.1 | ||||||||
| Y23H5A.7c.1 | |||||||||
| Other_sequence (60) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern | Expr1015575 | ||||||||
| Expr1030499 | |||||||||
| Expr1159226 | |||||||||
| Expr2009721 | |||||||||
| Expr2027960 | |||||||||
| Drives_construct | WBCnstr00037987 | ||||||||
| Construct_product | WBCnstr00037987 | ||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (91) | |||||||||
| Map_info | Map | I | Position | -8.11751 | Error | 0.030644 | |||
| Positive | Positive_clone | Y23H5A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | dl1 : probably cytoplasmic | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
