WormBase Tree Display for Gene: WBGene00000712

WBGene00000712 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F41F3
  Identity: Version: 1
    Name: CGC_name: col-139 Person_evidence: WBPerson345
      Sequence_name: F41F3.4
      Molecular_name: F41F3.4
        F41F3.4.1
        CE07218
      Other_name: CELE_F41F3.4 Accession_evidence: NDB BX284605
      Public_name: col-139
    DB_info: Database: AceView gene 5F132
        WormQTL gene WBGene00000712
        WormFlux gene WBGene00000712
        NDB locus_tag CELE_F41F3.4
        Panther gene CAEEL|WormBase=WBGene00000712|UniProtKB=Q20282
          family PTHR24637
        NCBI gene 178857
        RefSeq protein NM_071851.6
        TrEMBL UniProtAcc Q20282
        UniProt_GCRP UniProtAcc Q20282
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (34)
    Strain: WBStrain00050974
    RNASeq_FPKM (74)
    GO_annotation: 00067682
      00067683
      00067684
      00107700
    Ortholog: WBGene00058024 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00030515 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00128470 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00090882 Pristionchus pacificus From_analysis: OMA
      WBGene00100342 Pristionchus pacificus From_analysis: OMA
      CSP31.g9860 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g20763 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cni-col-139 Caenorhabditis nigoni From_analysis: WormBase-Compara
    Paralog (163)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F41F3.4
    Corresponding_transcript: F41F3.4.1
    Other_sequence (23)
    Associated_feature: WBsf999845
      WBsf999846
      WBsf233598
  Experimental_info: RNAi_result: WBRNAi00027331 Inferred_automatically: RNAi_primary
      WBRNAi00014763 Inferred_automatically: RNAi_primary
      WBRNAi00047011 Inferred_automatically: RNAi_primary
      WBRNAi00025465 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022409
      Expr1030430
      Expr1150876
      Expr2010332
      Expr2028576
    Drives_construct: WBCnstr00037346
    Construct_product: WBCnstr00037346
    Microarray_results (18)
    Expression_cluster (320)
    Interaction: WBInteraction000030161
      WBInteraction000102749
      WBInteraction000103310
      WBInteraction000104524
      WBInteraction000105448
      WBInteraction000109361
      WBInteraction000110584
      WBInteraction000111029
      WBInteraction000111250
      WBInteraction000111364
      WBInteraction000112184
      WBInteraction000116199
      WBInteraction000119677
      WBInteraction000119915
      WBInteraction000121369
      WBInteraction000124077
      WBInteraction000132997
      WBInteraction000134935
      WBInteraction000142485
      WBInteraction000143736
      WBInteraction000146206
      WBInteraction000157129
      WBInteraction000159999
      WBInteraction000160454
      WBInteraction000162079
      WBInteraction000182028
      WBInteraction000182263
      WBInteraction000182291
      WBInteraction000183181
      WBInteraction000188923
      WBInteraction000193767
      WBInteraction000194166
      WBInteraction000200884
      WBInteraction000222128
      WBInteraction000222788
      WBInteraction000223488
      WBInteraction000229229
      WBInteraction000231513
      WBInteraction000236142
      WBInteraction000238793
      WBInteraction000241035
      WBInteraction000253667
      WBInteraction000266578
      WBInteraction000274122
      WBInteraction000274749
      WBInteraction000279140
      WBInteraction000281372
      WBInteraction000291801
      WBInteraction000292777
      WBInteraction000309935
      WBInteraction000313937
      WBInteraction000315143
      WBInteraction000320488
      WBInteraction000320867
      WBInteraction000323833
      WBInteraction000330551
      WBInteraction000345530
      WBInteraction000345942
      WBInteraction000346567
      WBInteraction000357480
      WBInteraction000363824
      WBInteraction000369739
      WBInteraction000370595
      WBInteraction000382997
      WBInteraction000389925
      WBInteraction000394196
      WBInteraction000395994
      WBInteraction000402512
      WBInteraction000407257
      WBInteraction000407710
      WBInteraction000407711
      WBInteraction000407713
      WBInteraction000416088
      WBInteraction000428539
      WBInteraction000436294
      WBInteraction000441555
      WBInteraction000442393
      WBInteraction000463394
      WBInteraction000464058
      WBInteraction000467946
      WBInteraction000469142
      WBInteraction000474211
      WBInteraction000474746
  Map_info: Map: V Position: -4.81296 Error: 0.003939
    Positive: Positive_clone: F41F3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00059205
    WBPaper00065859
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene