WormBase Tree Display for Gene: WBGene00000706

WBGene00000706 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: C39E9
  Identity: Version: 1
    Name: CGC_name: col-132 Person_evidence: WBPerson345
      Sequence_name: C39E9.9
      Molecular_name: C39E9.9
        C39E9.9.1
        CE05392
      Other_name: CELE_C39E9.9 Accession_evidence: NDB BX284604
      Public_name: col-132
    DB_info: Database: AceView gene 4N854
        WormQTL gene WBGene00000706
        WormFlux gene WBGene00000706
        NDB locus_tag CELE_C39E9.9
        Panther gene CAEEL|WormBase=WBGene00000706|UniProtKB=Q18536
          family PTHR24637
        NCBI gene 183347
        RefSeq protein NM_070113.3
        TREEFAM TREEFAM_ID TF319073
        TrEMBL UniProtAcc Q18536
        UniProt_GCRP UniProtAcc Q18536
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (36)
    RNASeq_FPKM (74)
    GO_annotation: 00061599
      00061600
      00061601
      00107696
    Ortholog (27)
    Paralog (161)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C39E9.9
    Corresponding_transcript: C39E9.9.1
    Other_sequence: LSC00610_1
      DN557409.1
    Associated_feature: WBsf652323
      WBsf231083
  Experimental_info: RNAi_result: WBRNAi00042227 Inferred_automatically: RNAi_primary
      WBRNAi00011794 Inferred_automatically: RNAi_primary
      WBRNAi00029695 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015673
      Expr1030425
      Expr1146218
      Expr2010328
      Expr2028572
    Drives_construct: WBCnstr00037351
    Construct_product: WBCnstr00037351
    Microarray_results (18)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00061340:AIZ
      WBPaper00061340:MC
      WBPaper00061340:Neuroblast_I6_M5
      WBPaper00061340:Parent_of_hyp3_ILsoDx
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:col-84-col-45
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064315:mes-3(bn199)_downregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Cisplatin_upregulated_tetraploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:eri-1(mg366)_upregulated
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_G
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00045015:nhr-25(RNAi)_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc5376]:let-60(G12V)-regulated_genes
    Interaction: WBInteraction000297096
      WBInteraction000317526
      WBInteraction000325804
      WBInteraction000453085
  Map_info: Map: IV Position: 7.82751 Error: 0.010136
    Positive: Positive_clone: C39E9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005747
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene