WormBase Tree Display for Gene: WBGene00000677
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WBGene00000677 | Evidence | Person_evidence | WBPerson345 | ||||
---|---|---|---|---|---|---|---|
WBPerson651 | |||||||
SMap | S_parent | Sequence | F56B3 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | col | ||||||
Allele (35) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00033904 | ||||||
00033905 | |||||||
00107671 | |||||||
Ortholog (20) | |||||||
Paralog (170) | |||||||
Structured_description | Concise_description | col-103 encodes a collagen. | Curator_confirmed | WBPerson1843 | |||
Date_last_updated | 04 Jan 2013 00:00:00 | ||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F56B3.1 | |||||
Corresponding_transcript | F56B3.1.1 | ||||||
Other_sequence | AYC00052_1 | ||||||
CSC00402_1 | |||||||
FD514387.1 | |||||||
CBC03349_1 | |||||||
CR09102 | |||||||
HCC00309_1 | |||||||
BXC00451_1 | |||||||
CBC07972_1 | |||||||
CJC01220_1 | |||||||
Oden_isotig25992 | |||||||
Oden_isotig06947 | |||||||
MJ04494 | |||||||
Oden_isotig06942 | |||||||
CRC09457_1 | |||||||
Tcir_isotig12737 | |||||||
BXC06925_1 | |||||||
CR09103 | |||||||
MJC04070_1 | |||||||
HC00385 | |||||||
BM174408.1 | |||||||
HG06973 | |||||||
Oden_isotig06939 | |||||||
Tcol_isotig23382 | |||||||
Oden_isotig06946 | |||||||
AE04310 | |||||||
CJC04914_1 | |||||||
CBC13985_1 | |||||||
CSC00750_1 | |||||||
FD516480.1 | |||||||
HC02736 | |||||||
CK726420.1 | |||||||
Oden_isotig06944 | |||||||
JO467900.1 | |||||||
Oden_isotig06941 | |||||||
Tcir_isotig24117 | |||||||
GP00470 | |||||||
BXC03604_1 | |||||||
PT01400 | |||||||
CB013392.1 | |||||||
Dviv_isotig08914 | |||||||
Associated_feature | WBsf651629 | ||||||
WBsf981663 | |||||||
WBsf995269 | |||||||
WBsf229715 | |||||||
Experimental_info | RNAi_result | WBRNAi00032926 | Inferred_automatically | RNAi_primary | |||
WBRNAi00114422 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027371 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015778 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048626 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00025696 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1010672 | ||||||
Expr1030402 | |||||||
Expr1152395 | |||||||
Expr2010301 | |||||||
Expr2028544 | |||||||
Drives_construct | WBCnstr00037376 | ||||||
Construct_product | WBCnstr00037376 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (308) | |||||||
Interaction (43) | |||||||
Map_info | Map | IV | Position | -23.5229 | Error | 0.006013 | |
Positive | Positive_clone | F56B3 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00025192 | ||||||
WBPaper00041771 | |||||||
WBPaper00063926 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |