WormBase Tree Display for Gene: WBGene00000677
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| WBGene00000677 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F56B3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-103 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F56B3.1 | ||||||||
| Molecular_name | F56B3.1 | ||||||||
| F56B3.1.1 | |||||||||
| CE17882 | |||||||||
| Other_name | CELE_F56B3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | col-103 | ||||||||
| DB_info | Database | AceView | gene | 4B516 | |||||
| WormQTL | gene | WBGene00000677 | |||||||
| WormFlux | gene | WBGene00000677 | |||||||
| NDB | locus_tag | CELE_F56B3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000677|UniProtKB=O45114 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 176901 | |||||||
| RefSeq | protein | NM_067581.8 | |||||||
| TREEFAM | TREEFAM_ID | TF316783 | |||||||
| TrEMBL | UniProtAcc | O45114 | |||||||
| UniProt_GCRP | UniProtAcc | O45114 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (35) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033904 | ||||||||
| 00033905 | |||||||||
| 00107671 | |||||||||
| Ortholog | WBGene00068377 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00032009 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00126988 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WBGene00163006 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00072495 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| WBGene00228353 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| CSP28.g10770 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g7483 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| GCK72_002738 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g09661 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Pan_g5584 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
| Sp34_20288400 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g9563 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00237999 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| WBGene00257298 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00260700 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00262681 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00288383 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
| ZFIN:ZDB-GENE-030131-3430 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Inparanoid | |||||||||
| ZFIN:ZDB-GENE-110411-119 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Inparanoid | |||||||||
| Paralog (170) | |||||||||
| Structured_description | Concise_description | col-103 encodes a collagen. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 04 Jan 2013 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56B3.1 | |||||||
| Corresponding_transcript | F56B3.1.1 | ||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf651629 | ||||||||
| WBsf981663 | |||||||||
| WBsf995269 | |||||||||
| WBsf229715 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032926 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00114422 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027371 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015778 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048626 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025696 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010672 | ||||||||
| Expr1030402 | |||||||||
| Expr1152395 | |||||||||
| Expr2010301 | |||||||||
| Expr2028544 | |||||||||
| Drives_construct | WBCnstr00037376 | ||||||||
| Construct_product | WBCnstr00037376 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (308) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | IV | Position | -23.5229 | Error | 0.006013 | |||
| Positive | Positive_clone | F56B3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025192 | ||||||||
| WBPaper00041771 | |||||||||
| WBPaper00063926 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
