WormBase Tree Display for Gene: WBGene00000665

WBGene00000665 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: C29E4
  Identity: Version: 1
    Name: CGC_name: col-90 Person_evidence: WBPerson345
      Sequence_name: C29E4.1
      Molecular_name: C29E4.1
        C29E4.1.1
        CE00083
      Other_name: CELE_C29E4.1 Accession_evidence: NDB BX284603
      Public_name: col-90
    DB_info: Database: AceView gene 3J39
        WormQTL gene WBGene00000665
        WormFlux gene WBGene00000665
        NDB locus_tag CELE_C29E4.1
        Panther gene CAEEL|WormBase=WBGene00000665|UniProtKB=P34340
          family PTHR24637
        NCBI gene 176117
        RefSeq protein NM_066328.6
        SwissProt UniProtAcc P34340
        TREEFAM TREEFAM_ID TF319043
        UniProt_GCRP UniProtAcc P34340
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (23)
    RNASeq_FPKM (74)
    GO_annotation: 00041752
      00041753
      00041754
      00107660
    Ortholog: WBGene00033263 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            WormBase-Compara
      WBGene00033265 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00072946 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00143514 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137521 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00140917 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00090882 Pristionchus pacificus From_analysis: OMA
      WBGene00228353 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5680 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14759 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8038 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5347 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1317 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11067 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2515 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4704 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18662 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1063 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_08314.g21432 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_26555.g27430 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-col-90 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12577 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02952.g28525 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_009184 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11358 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12195 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5584 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30046200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8264 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00212030 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00237999 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288383 Trichuris muris From_analysis: WormBase-Compara
    Paralog (165)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C29E4.1
    Corresponding_transcript: C29E4.1.1
    Other_sequence (23)
    Associated_feature: WBsf659211
      WBsf225309
      WBsf225310
      WBsf225311
      WBsf225312
      WBsf225313
  Experimental_info: RNAi_result: WBRNAi00041442 Inferred_automatically: RNAi_primary
      WBRNAi00027194 Inferred_automatically: RNAi_primary
      WBRNAi00011322 Inferred_automatically: RNAi_primary
      WBRNAi00024666 Inferred_automatically: RNAi_primary
      WBRNAi00029310 Inferred_automatically: RNAi_primary
      WBRNAi00007443 Inferred_automatically: RNAi_primary
      WBRNAi00005165 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028656
      Expr1030392
      Expr1145471
      Expr2010437
      Expr2028677
    Drives_construct: WBCnstr00037386
    Construct_product: WBCnstr00037386
    Microarray_results (19)
    Expression_cluster (322)
    Interaction (201)
  Map_info: Map: III Position: -0.468837 Error: 0.001921
    Positive: Positive_clone: C29E4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00063976
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene