WormBase Tree Display for Gene: WBGene00000627
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| WBGene00000627 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | T28F2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-50 | Person_evidence | WBPerson345 | |||||
| Sequence_name | T28F2.6 | ||||||||
| Molecular_name | T28F2.6 | ||||||||
| T28F2.6.1 | |||||||||
| CE14361 | |||||||||
| T28F2.6.2 | |||||||||
| Other_name | CELE_T28F2.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | col-50 | ||||||||
| DB_info | Database | AceView | gene | 1E218 | |||||
| WormQTL | gene | WBGene00000627 | |||||||
| WormFlux | gene | WBGene00000627 | |||||||
| NDB | locus_tag | CELE_T28F2.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000627|UniProtKB=O01662 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 189050 | |||||||
| RefSeq | protein | NM_001393238.1 | |||||||
| TREEFAM | TREEFAM_ID | TF319043 | |||||||
| TrEMBL | UniProtAcc | O01662 | |||||||
| UniProt_GCRP | UniProtAcc | O01662 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele | WBVar00310775 | ||||||||
| WBVar01499786 | |||||||||
| WBVar01499985 | |||||||||
| WBVar01342984 | |||||||||
| WBVar00330880 | |||||||||
| WBVar00330881 | |||||||||
| WBVar00330882 | |||||||||
| WBVar00330883 | |||||||||
| WBVar00330884 | |||||||||
| WBVar00330885 | |||||||||
| WBVar00330886 | |||||||||
| WBVar00627571 | |||||||||
| WBVar00627572 | |||||||||
| WBVar00627573 | |||||||||
| WBVar00627574 | |||||||||
| WBVar00627575 | |||||||||
| WBVar00627576 | |||||||||
| WBVar00627577 | |||||||||
| WBVar00627578 | |||||||||
| WBVar00627579 | |||||||||
| WBVar00627580 | |||||||||
| WBVar00627581 | |||||||||
| WBVar00627582 | |||||||||
| WBVar00627583 | |||||||||
| WBVar00627584 | |||||||||
| WBVar00627585 | |||||||||
| WBVar00627586 | |||||||||
| WBVar00627587 | |||||||||
| WBVar00627588 | |||||||||
| WBVar00627589 | |||||||||
| WBVar00627590 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00025256 | ||||||||
| 00025257 | |||||||||
| 00025258 | |||||||||
| 00107633 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (27) | |||||||||
| Structured_description | Concise_description | col-50 encodes a cuticle collagen. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 03 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28F2.6 | |||||||
| Corresponding_transcript | T28F2.6.1 | ||||||||
| T28F2.6.2 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf983188 | ||||||||
| WBsf983189 | |||||||||
| WBsf1009531 | |||||||||
| WBsf1009532 | |||||||||
| WBsf219159 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036095 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054430 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004341 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021300 | ||||||||
| Expr1030370 | |||||||||
| Expr1157974 | |||||||||
| Expr2010402 | |||||||||
| Expr2028644 | |||||||||
| Drives_construct | WBCnstr00037417 | ||||||||
| Construct_product | WBCnstr00037417 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction | WBInteraction000318147 | ||||||||
| WBInteraction000378892 | |||||||||
| WBInteraction000401032 | |||||||||
| WBInteraction000417258 | |||||||||
| WBInteraction000419157 | |||||||||
| WBInteraction000434872 | |||||||||
| WBInteraction000448009 | |||||||||
| WBInteraction000469617 | |||||||||
| WBInteraction000472066 | |||||||||
| WBInteraction000472666 | |||||||||
| Map_info | Map | I | Position | -3.04174 | Error | 0.009173 | |||
| Positive | Positive_clone | T28F2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063926 | |||||||||
| WBPaper00064788 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
