WormBase Tree Display for Gene: WBGene00000555
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| WBGene00000555 | Evidence | Person_evidence | WBPerson168 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R09B5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cnc-1 | Person_evidence | WBPerson168 | |||||
| Sequence_name | R09B5.2 | ||||||||
| Molecular_name | R09B5.2 | ||||||||
| R09B5.2.1 | |||||||||
| CE12620 | |||||||||
| Other_name | CELE_R09B5.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cnc-1 | ||||||||
| DB_info | Database | AceView | gene | 5B920 | |||||
| WormQTL | gene | WBGene00000555 | |||||||
| WormFlux | gene | WBGene00000555 | |||||||
| NDB | locus_tag | CELE_R09B5.2 | |||||||
| NCBI | gene | 187726 | |||||||
| RefSeq | protein | NM_071013.3 | |||||||
| TrEMBL | UniProtAcc | O44615 | |||||||
| UniProt_GCRP | UniProtAcc | O44615 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cnc | ||||||||
| Allele | WBVar01500253 | ||||||||
| WBVar01499528 | |||||||||
| WBVar02051893 | |||||||||
| WBVar01499167 | |||||||||
| WBVar01499740 | |||||||||
| WBVar01499784 | |||||||||
| WBVar01499969 | |||||||||
| WBVar01499496 | |||||||||
| WBVar00986557 | |||||||||
| WBVar01500066 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032952 | ||||||||
| 00032953 | |||||||||
| 00032954 | |||||||||
| Ortholog | WBGene00079024 | Caenorhabditis remanei | From_analysis | OMA | |||||
| WBGene00079005 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00156990 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| WBGene00157364 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| Structured_description | Concise_description | cnc-1 encodes one of eleven C. elegans caenacin peptides; CNC-1 is predicted to be a secreted protein that functions as an antimicrobial peptide in the innate immune response; cnc-1 expression is induced in response to infection with the fungus Drechmeria coniospora and also in response to injury (needle wounding); overexpression of a genomic cluster containing cnc-1, along with the five other cnc genes, is associated with increased resistance to D. coniospora infection. | Paper_evidence | WBPaper00006488 | |||||
| WBPaper00032891 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Jan 2010 00:00:00 | ||||||||
| Automated_description | Involved in defense response to fungus and innate immune response. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R09B5.2 | |||||||
| Corresponding_transcript | R09B5.2.1 | ||||||||
| Associated_feature | WBsf1019178 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00051596 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017628 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021730 | ||||||||
| Expr1155270 | |||||||||
| Drives_construct | WBCnstr00037456 | ||||||||
| Construct_product | WBCnstr00037456 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | V | Position | -18.9306 | |||||
| Positive | Positive_clone | R09B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006437 | ||||||||
| WBPaper00006488 | |||||||||
| WBPaper00032891 | |||||||||
| WBPaper00060703 | |||||||||
| WBPaper00061421 | |||||||||
| WBPaper00062273 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
