WormBase Tree Display for Gene: WBGene00000540
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WBGene00000540 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C01G8 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | cln-3.2 | |||||||
Sequence_name | C01G8.2 | ||||||||
Molecular_name | C01G8.2 | ||||||||
C01G8.2.1 | |||||||||
CE07802 | |||||||||
Other_name | CELE_C01G8.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | cln-3.2 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cln | ||||||||
Allele (52) | |||||||||
Strain | WBStrain00003317 | ||||||||
WBStrain00035515 | |||||||||
WBStrain00040680 | |||||||||
WBStrain00040681 | |||||||||
WBStrain00040682 | |||||||||
WBStrain00040677 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Contained_in_operon | CEOP1232 | ||||||||
Ortholog (40) | |||||||||
Paralog | WBGene00000539 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00007586 | |||||||||
WBGene00000541 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Involved in determination of adult lifespan and regulation of egg-laying behavior. Predicted to be located in lysosome. Used to study neuronal ceroid lipofuscinosis. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 3. Is an ortholog of human CLN3 (CLN3 lysosomal/endosomal transmembrane protein, battenin). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:14503 | Homo sapiens | Paper_evidence | WBPaper00027030 | ||||
Accession_evidence | OMIM | 204200 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 26 Mar 2013 00:00:00 | ||||||||
Potential_model | DOID:0110731 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2074) | |||||
Models_disease_asserted | WBDOannot00000119 | ||||||||
WBDOannot00000120 | |||||||||
Molecular_info | Corresponding_CDS | C01G8.2 | |||||||
Corresponding_transcript | C01G8.2.1 | ||||||||
Other_sequence (22) | |||||||||
Associated_feature | WBsf983643 | ||||||||
WBsf219397 | |||||||||
WBsf219398 | |||||||||
Experimental_info | RNAi_result | WBRNAi00076068 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002879 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028311 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039362 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007910 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram135 | ||||||||
Expr5097 | |||||||||
Expr1011613 | |||||||||
Expr1030323 | |||||||||
Expr1143478 | |||||||||
Expr2010241 | |||||||||
Expr2028483 | |||||||||
Drives_construct | WBCnstr00003788 | ||||||||
WBCnstr00011675 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (69) | |||||||||
Interaction | WBInteraction000122589 | ||||||||
WBInteraction000133975 | |||||||||
WBInteraction000133976 | |||||||||
WBInteraction000469665 | |||||||||
Map_info | Map | I | Position | -0.208648 | Error | 0.012379 | |||
Positive | Positive_clone | C01G8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4226 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004972 | ||||||||
WBPaper00004973 | |||||||||
WBPaper00005520 | |||||||||
WBPaper00011371 | |||||||||
WBPaper00018531 | |||||||||
WBPaper00019415 | |||||||||
WBPaper00027030 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00066025 | |||||||||
Remark (2) | |||||||||
Method | Gene |