WormBase Tree Display for Gene: WBGene00000521
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| WBGene00000521 | SMap | S_parent | Sequence | C15C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cky-1 | Person_evidence | WBPerson496 | |||||
| Sequence_name | C15C8.2 | ||||||||
| Molecular_name | C15C8.2 | ||||||||
| C15C8.2.1 | |||||||||
| CE41867 | |||||||||
| Other_name | cNXFL | Paper_evidence | WBPaper00030846 | ||||||
| CELE_C15C8.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | cky-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000521 | |||||
| WormFlux | gene | WBGene00000521 | |||||||
| NDB | locus_tag | CELE_C15C8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000521|UniProtKB=G5EFL9 | |||||||
| family | PTHR23043 | ||||||||
| NCBI | gene | 179743 | |||||||
| RefSeq | protein | NM_001129377.5 | |||||||
| SwissProt | UniProtAcc | G5EFL9 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFL9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cky | ||||||||
| Allele (70) | |||||||||
| Strain | WBStrain00040842 | ||||||||
| WBStrain00037011 | |||||||||
| WBStrain00037220 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001851 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00011327 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cky-1 encodes a member of the basic helix-loop-helix/Per-Arnt-Sim (bHLH-PAS) protein family; CKY-1 physically interacts with AHA-1, and when co-expressed in vitro, an AHA-1/CKY-1 complex exhibits sequence-specific DNA binding; when co-expressed in cultured cells, the AHA-1/CKY-1 complex can stimulate reporter gene transcription; cky-1 is expressed in non-neuronal pharyngeal cells. | Paper_evidence | WBPaper00028424 | |||||
| WBPaper00030846 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 05 Jan 2010 00:00:00 | ||||||||
| Automated_description | Contributes to sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Part of RNA polymerase II transcription regulator complex. Expressed in pharyngeal cell. Is an ortholog of human NPAS4 (neuronal PAS domain protein 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15C8.2 | |||||||
| Corresponding_CDS_history | C15C8.2:wp76 | ||||||||
| C15C8.2a:wp261 | |||||||||
| C15C8.2b:wp261 | |||||||||
| Corresponding_transcript | C15C8.2.1 | ||||||||
| Other_sequence | FC815547.1 | ||||||||
| Dviv_isotig15505 | |||||||||
| Dviv_isotig15506 | |||||||||
| Dviv_isotig23862 | |||||||||
| SRC01606_1 | |||||||||
| SR02424 | |||||||||
| JI169314.1 | |||||||||
| Associated_feature | WBsf647400 | ||||||||
| WBsf647401 | |||||||||
| WBsf661929 | |||||||||
| WBsf661930 | |||||||||
| WBsf661931 | |||||||||
| WBsf978906 | |||||||||
| WBsf1001637 | |||||||||
| WBsf1020610 | |||||||||
| WBsf232691 | |||||||||
| Transcription_factor | WBTranscriptionFactor000143 | ||||||||
| WBTranscriptionFactor000573 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040601 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028916 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064895 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00099157 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11122 | ||||||||
| Expr1027827 | |||||||||
| Expr1030311 | |||||||||
| Expr1144656 | |||||||||
| Expr2010039 | |||||||||
| Expr2028280 | |||||||||
| Drives_construct | WBCnstr00000624 | ||||||||
| WBCnstr00018170 | |||||||||
| WBCnstr00037478 | |||||||||
| Construct_product | WBCnstr00016898 | ||||||||
| WBCnstr00037478 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (134) | |||||||||
| Interaction | WBInteraction000028956 | ||||||||
| WBInteraction000218925 | |||||||||
| WBInteraction000513569 | |||||||||
| WBInteraction000523913 | |||||||||
| WBInteraction000523917 | |||||||||
| WBInteraction000525655 | |||||||||
| WBInteraction000527937 | |||||||||
| WBInteraction000547266 | |||||||||
| WBInteraction000555680 | |||||||||
| Map_info | Map | V | Position | 4.61826 | Error | 0.000422 | |||
| Positive | Positive_clone | C15C8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012392 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00028424 | |||||||||
| WBPaper00030846 | |||||||||
| WBPaper00034761 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00051737 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Powell-Coffman JA], [020808 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
