WormBase Tree Display for Gene: WBGene00000484
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WBGene00000484 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F38G1 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | che | ||||||
Reference_allele | WBVar00143695 | ||||||
Allele (93) | |||||||
Legacy_information | e1033 : non-chemotactic to sodium ion slightly small defective osmotic avoidance defective dauer formation males impotent; no FITC uptake; ciliated neurons have abnormal stunted ultrastructure. ES2 ME0. NA1. | ||||||
See also e1033 | |||||||
[C.elegansII] e1033 : non-chemotactic to sodium ion; slightly small; defective osmotic avoidance; defective dauer formation; males impotent; Dyf (no FITC uptake); ciliated neurons have abnormal stunted ultrastructure. ES2. ME0.OA5: m127, mn330mut, mn395 etc. [Lewis and Hodgkin 1977; Starich et al. 1995; DR; SP; NJ] | |||||||
Strain | WBStrain00030520 | ||||||
WBStrain00030521 | |||||||
WBStrain00004231 | |||||||
WBStrain00006208 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (19) | |||||||
Ortholog (39) | |||||||
Structured_description | Concise_description | che-2 encodes a protein that contains G-protein beta-like WD-40 repeats that affects chemotaxis, dauer formation, and longevity; expressed in the cilia of most ciliated sensory neurons, some head neurons, and male tail rays. | Paper_evidence | WBPaper00001482 | |||
WBPaper00001786 | |||||||
WBPaper00002033 | |||||||
WBPaper00003761 | |||||||
WBPaper00003977 | |||||||
WBPaper00004692 | |||||||
WBPaper00005596 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Involved in several processes, including dauer larval development; negative regulation of transforming growth factor beta receptor signaling pathway; and positive regulation of locomotion involved in locomotory behavior. Located in ciliary basal body and non-motile cilium. Expressed in neurons. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Is an ortholog of human IFT80 (intraflagellar transport 80). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0110086 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29262) | ||
Molecular_info | Corresponding_CDS | F38G1.1 | |||||
Corresponding_transcript | F38G1.1.1 | ||||||
Other_sequence | Acan_isotig12713 | ||||||
JI226764.1 | |||||||
Associated_feature | WBsf042305 | ||||||
WBsf647785 | |||||||
WBsf1003791 | |||||||
WBsf235268 | |||||||
Experimental_info | RNAi_result | WBRNAi00014580 | Inferred_automatically | RNAi_primary | |||
WBRNAi00068042 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067404 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067940 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046733 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1157 | ||||||
Expr10123 | |||||||
Expr1024294 | |||||||
Expr1030285 | |||||||
Expr1150609 | |||||||
Expr2009965 | |||||||
Expr2028205 | |||||||
Drives_construct (17) | |||||||
Construct_product (11) | |||||||
Microarray_results (20) | |||||||
Expression_cluster (153) | |||||||
Interaction (81) | |||||||
Map_info | Map | X | Position | -19.7593 | Error | 0.046333 | |
Well_ordered | |||||||
Positive | Positive_clone | F38G1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | 2_point | 3385 | |||||
Multi_point | 1213 | ||||||
1585 | |||||||
1856 | |||||||
2320 | |||||||
2431 | |||||||
2432 | |||||||
4432 | |||||||
Pos_neg_data | 5455 | ||||||
5461 | |||||||
5466 | |||||||
5470 | |||||||
5474 | |||||||
5478 | |||||||
5482 | |||||||
5486 | |||||||
5490 | |||||||
5494 | |||||||
Reference (127) | |||||||
Remark | Sequence connection from [Fujiwara M, Katsura I] | ||||||
Method | Gene |