WormBase Tree Display for Gene: WBGene00000461
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WBGene00000461 | SMap | S_parent | Sequence | F17A2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ceh | ||||||
Allele (46) | |||||||
Legacy_information | [Burglin,03/98] homeobox gene | ||||||
Strain (11) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (19) | |||||||
Ortholog (19) | |||||||
Paralog | WBGene00000443 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00006796 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00017690 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | ceh-40 encodes one of three C. elegans homeodomain proteins (CEH-20, CEH-40, and CEH-60) homologous to Extradenticle (Exd/Pbx); ceh-40 genetically interacts with ceh-20 and unc-62 during embryonic development: while loss of ceh-40 activity alone results in no significant embryonic lethality, loss of ceh-40 and ceh-20, or ceh-40, ceh-20, and unc-62, results in incompletely penetrant embryonic lethality. | Paper_evidence | WBPaper00005629 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson480 | |||||||
Date_last_updated | 27 Jun 2011 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in dopaminergic neurons. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F17A2.5 | |||||
Corresponding_transcript | F17A2.5.1 | ||||||
Other_sequence | RSC01549_1 | ||||||
RS05971 | |||||||
CRC11909_1 | |||||||
Associated_feature | WBsf654475 | ||||||
WBsf978385 | |||||||
WBsf1007276 | |||||||
WBsf1024032 | |||||||
Transcription_factor | WBTranscriptionFactor000510 | ||||||
Experimental_info | RNAi_result (25) | ||||||
Expr_pattern (14) | |||||||
Drives_construct | WBCnstr00002363 | ||||||
WBCnstr00002683 | |||||||
WBCnstr00037519 | |||||||
WBCnstr00042432 | |||||||
WBCnstr00042463 | |||||||
Construct_product | WBCnstr00016535 | ||||||
WBCnstr00016723 | |||||||
WBCnstr00037519 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (147) | |||||||
Interaction (286) | |||||||
Map_info | Map | X | Position | 7.02147 | Error | 0.003548 | |
Positive | Positive_clone | F17A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
W06D11 | |||||||
Mapping_data | Multi_point | 4173 | |||||
4210 | |||||||
4765 | |||||||
Pseudo_map_position | |||||||
Reference (22) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |